SecReT6
I. Summary
SecReT6 ID827 insolico
StrainVibrio parahaemolyticus O1:K33 str. CDC_K4557
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_021848
Location1381079..1410247
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1M636_147401376100..1376666 [-], 567525960166hypothetical protein 
2M636_147451376835..1376957 [-], 123525960167hypothetical protein 
3M636_147501376954..1377415 [-], 462525960168hypothetical protein 
4M636_147551377629..1378180 [-], 552525960169hypothetical protein 
5M636_147601378180..1378773 [-], 594525960170hypothetical protein  VP1416 (i)
6M636_147651378773..1380929 [-], 2157525960171hypothetical protein  VP1415 (e)
7M636_147701381079..1381885 [-], 807525958483type VI secretion protein  TssL
8M636_147751381867..1383192 [-], 1326525958484type VI secretion protein  TssK
9M636_147801383204..1383704 [-], 501525958485type VI secretion protein  TssJ
10M636_147851383697..1385205 [-], 1509525958486signal peptide protein  Fha
11M636_147901385215..1385826 [-], 612525958487hypothetical protein 
12M636_147951386319..1387644 [+], 1326525958488type VI secretion protein  TssA
13M636_148001387666..1391055 [+], 3390525958489type VI secretion protein IcmF  TssM
14M636_148051391088..1391540 [+], 453525958490AsnC family transcriptional regulator 
15M636_148101391604..1392602 [-], 999525958491type VI secretion protein  TssG
16M636_148151392599..1394347 [-], 1749525958492type VI secretion system protein ImpG  TssF
17M636_148201394358..1394822 [-], 465525958493type VI secretion protein  TssE
18M636_148251394830..1396305 [-], 1476525958494type VI secretion protein  TssC
19M636_148301396314..1396820 [-], 507525958495hypothetical protein  TssB
20M636_148351396847..1398421 [-], 1575525958496type VI secretion protein  TssA
21M636_148401398421..1400481 [-], 2061525958497serine-threonine protein kinase 
22M636_148451400659..1401603 [-], 945525958498hypothetical protein 
23M636_148501401596..1402588 [-], 993525958499hypothetical protein 
24M636_148551402569..1403888 [-], 1320525960172hypothetical protein 
25M636_148601403966..1404451 [-], 486525958500hypothetical protein 
26M636_148651404451..1406529 [-], 2079525958501type VI secretion protein VgrG  TssI
27M636_148701406602..1407120 [-], 519525958502hypothetical protein  TssD
28M636_148751407569..1410247 [+], 2679525958503ATPase AAA  TssH
29M636_148801410234..1411865 [+], 1632525958504transcriptional regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VP1393 , VP1388, VP1415

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1M636_148701406602..1407120 [-], 519525958502hypothetical protein VP1393
2M636_148951418027..1419697 [-], 1671525958505hypothetical protein VP1388
3M636_147651378773..1380929 [-], 2157525960171hypothetical protein VP1415

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Proteins        Genes

Homology Immunity protein list
VP1416

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1M636_147601378180..1378773 [-], 594525960170hypothetical protein VP1416

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Proteins        Genes
N/A