SecReT6
I. Summary
SecReT6 ID829 insolico
StrainBurkholderia pseudomallei MSHR305
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_021877
Location266566..292886
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BDL_3739262287..262976 [-], 690526458657CDP-alcohol phosphatidyltransferase family protein 
2BDL_3740263342..264856 [+], 1515526458604succinate CoA transferase family protein 
3BDL_3741264953..265585 [+], 633526457782hypothetical protein 
4BDL_3742266566..267504 [+], 939526456945hypothetical protein  TssA
5BDL_3743267538..268086 [+], 549526457846hypothetical protein  TssB
6BDL_3744268083..269594 [+], 1512526458114hypothetical protein  TssC
7BDL_3745269738..270265 [+], 528526459131hypothetical protein  TssD
8BDL_3746270345..270776 [+], 432526458798lysozyme family protein  TssE
9BDL_3747270790..272652 [+], 1863526457193hypothetical protein  TssF
10BDL_3748272649..273638 [+], 990526457256hypothetical protein  TssG
11BDL_3749 (clpV)273641..276511 [+], 2871526457442type VI secretion ATPase, ClpV1 family  TssH
12BDL_3750276502..278793 [+], 2292526459208Rhs element Vgr family protein  TssI
13BDL_3751278959..281247 [+], 2289526459109Rhs element Vgr family protein  TssI
14BDL_3752281251..283467 [+], 2217526457961pentapeptide repeats family protein 
15BDL_3753283467..284537 [+], 1071526458150pentapeptide repeats family protein 
16BDL_3754284540..285256 [+], 717526456774hypothetical protein 
17BDL_3755285326..285688 [+], 363526458968hypothetical protein 
18BDL_3756285706..286287 [+], 582526458598type VI secretion lipofamily protein  TssJ
19BDL_3757286284..287645 [+], 1362526458074hypothetical protein  TssK
20BDL_3758287671..289386 [+], 1716526458107type IV/VI secretion system , DotU family domain protein  TssL
21BDL_3759289383..292886 [+], 3504526459190intracellular multiplication and macrophage-killing family protein  TssM
22BDL_3760292945..293304 [+], 360526458474hypothetical protein 
23BDL_3761293459..293752 [+], 294526457361hypothetical protein 
24BDL_3762293977..294348 [+], 372526459058hypothetical protein 
25BDL_3763294899..295798 [+], 900526458163alpha/beta hydrolase family protein 
26BDL_3764296020..297339 [+], 1320526459316hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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