I. Summary
SecReT6 ID83 insolico
StrainXanthomonas oryzae pv. oryzae KACC 10331
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XOO34593698383..3698691 [-], 30958583082hypothetical protein 
2XOO34603698698..3699039 [-], 34258583083hypothetical protein 
3XOO3461 (hsdR)3699193..3702765 [+], 357358583084type I restriction enzyme EcoKI subunit R 
4XOO34623702677..3703903 [+], 122758583085abortive infection bacteriophage resistance protein 
5XOO3463 (hsdM-2)3703950..3705494 [+], 154558583086type I restriction-modification system, M subunit 
6XOO34643705472..3706866 [+], 139558583087Type I restriction enzyme StySPI specificity protein 
7XOO34653706900..3707208 [-], 30958583088hypothetical protein 
8YXOOp023707215..3707478 [-], 264121632114hypothetical protein 
9XOO34663708207..3708962 [+], 75658583089hypothetical protein  TssI
10XOO34673709256..3710278 [-], 102358583090hypothetical protein 
11XOO34683710288..3713155 [-], 286858583091hypothetical protein 
12XOO34723716033..3718045 [-], 201358583095hypothetical protein 
13XOO48823719245..3720123 [-], 879121632115hypothetical protein 
14XOO34733720130..3721191 [-], 1062122879263hypothetical protein 
15XOO34743721305..3722894 [-], 159058583097hypothetical protein  TssI
16YXOOp033722987..3723340 [-], 354121632116hypothetical protein 
17XOO3475 (clpB)3723371..3726100 [-], 273058583098chaperone ClpB  TssH
18XOO34763726186..3727277 [-], 109258583099hypothetical protein  TssG
19XOO34773727241..3729076 [-], 183658583100hypothetical protein  TssF
20XOO34783729079..3729567 [-], 48958583101hypothetical protein  TssE
21XOO3479 (hcp)3729715..3730212 [-], 49858583102hypothetical protein  TssD
22XOO34803730354..3731850 [-], 149758583103hypothetical protein  TssC
23XOO34813731854..3732354 [-], 50158583104hypothetical protein  TssB
24XOO34823732401..3733015 [-], 61558583105hypothetical protein 
25XOO34833733231..3733884 [+], 65458583106transmembrane protein  TssJ
26XOO34843734036..3735370 [+], 1335122879264hypothetical protein  TssK
27XOO34853735367..3736158 [+], 79258583108hypothetical protein  TssL
28XOO34863736169..3738706 [+], 253858583109hypothetical protein  TssI
29XOO34873738731..3741625 [+], 289558583110EF hand domain-containing protein 
30XOO34883742460..3743893 [+], 143458583111hypothetical protein  TssI
31XOO34893743897..3746152 [+], 225658583112hypothetical protein 
32XOO34903746714..3748975 [+], 226258583113hypothetical protein  TssI
33XOO34913751166..3752389 [+], 122458583114ISxac1 transposase 
34XOO34923752416..3752955 [+], 54058583115hypothetical protein 
35XOO48853753076..3753369 [+], 294121632117hypothetical protein 
36YXOOp043754099..3754446 [+], 348121632118hypothetical protein 
37XOO34933754541..3755431 [+], 89158583116hypothetical protein  TssK
38XOO34943755428..3756219 [+], 79258583117hypothetical protein  TssL
39XOO34953756230..3757396 [+], 116758583118hypothetical protein  TssI
40XOO34983758605..3758994 [-], 39058583121VGR-related protein 
41XOO34993758975..3761257 [-], 228358583122hypothetical protein 
42XOO35003761206..3761802 [-], 59758583123hypothetical protein 
43XOO35013761795..3762670 [-], 87658583124hypothetical protein 
44XOO35033763083..3764609 [-], 152758583126VGR-related protein  TssI
45XOO35043764610..3765293 [-], 68458583127hypothetical protein  TssI
46XOO35053765389..3766435 [+], 104758583128sulfatase modifying factor 1 (C-alpha-formyglycine-generating enzyme 1) 
47XOO35063766489..3769554 [-], 306658583129DNA repair ATPase 
48XOO35073769541..3770086 [-], 54658583130hypothetical protein 
49XOO35083770168..3772000 [-], 183358583131hypothetical protein 
50XOO48873771997..3772254 [-], 258121632119hypothetical protein 
51XOO35093772500..3772964 [-], 465122879265hypothetical protein 
52XOO48883773281..3773538 [-], 258121632120hypothetical protein 
53YXOOp053773582..3773764 [-], 183121632121hypothetical protein 
54XOO35103773785..3774249 [-], 46558583133hypothetical protein 
55XOO35113774246..3775199 [-], 95458583134hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation