SecReT6
I. Summary
SecReT6 ID831 insolico
StrainBurkholderia pseudomallei MSHR305
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_021877
Location2565877..2589076
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BDL_55522562440..2563267 [-], 828526457173integrase core domain protein 
2BDL_55532563290..2565065 [-], 1776526456986integrase core domain protein 
3BDL_55542565151..2565819 [-], 669526457171hypothetical protein 
4BDL_55552565877..2568081 [-], 2205526457575Rhs element Vgr family protein  TssI
5BDL_5556 (clpV)2568078..2570744 [-], 2667526458222type VI secretion ATPase, ClpV1 family  TssH
6BDL_55572570723..2572201 [-], 1479526458164hypothetical protein  TssG
7BDL_55582572198..2574069 [-], 1872526457373hypothetical protein  TssF
8BDL_55592574074..2574634 [-], 561526457275lysozyme family protein  TssE
9BDL_5560 (hcp1)2574653..2575144 [-], 492526458984protein hcp1  TssD
10BDL_55612575204..2576712 [-], 1509526458140hypothetical protein  TssC
11BDL_55622576705..2577283 [-], 579526457197hypothetical protein  TssB
12BDL_55632577346..2578425 [-], 1080526459197hypothetical protein  TssA
13BDL_55642578478..2581072 [-], 2595526457208tyrosine kinase family protein 
14BDL_55652581283..2582197 [-], 915526458678hypothetical protein 
15BDL_55662582194..2585823 [-], 3630526459242intracellular multiplication and macrophage-killing family protein  TssM
16BDL_55672585826..2587142 [-], 1317526458428type VI secretion system OmpA/MotB family protein  TssL
17BDL_55682587158..2588561 [-], 1404526459023hypothetical protein  TssK
18BDL_55692588558..2589076 [-], 519526458019type VI secretion lipofamily protein  TssJ
19BDL_55702589716..2590117 [+], 402526458337hypothetical protein 
20BDL_55712590172..2591608 [+], 1437526458648FHA domain protein  Fha
21BDL_55722591651..2593417 [-], 1767526457364transglutaminase-like superfamily protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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