SecReT6
I. Summary
SecReT6 ID832 insolico
StrainBurkholderia pseudomallei MSHR305
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_021877
Location2998229..3056046
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BDL_59082993261..2993713 [-], 453526456905acetyltransferase domain protein 
2BDL_59092994532..2995092 [+], 561526458173binding--dependent transport system inner membrane component family protein 
3BDL_59102995079..2995933 [+], 855526457763binding--dependent transport system inner membrane component family protein 
4BDL_59112995930..2996961 [+], 1032526457359bacterial extracellular solute-binding family protein 
5BDL_59122998229..3001021 [+], 2793526459071Rhs element Vgr family protein  TssI
6BDL_59133001035..3003275 [+], 2241526457937hypothetical protein  BTH_I3226 (e)
7BDL_59143003564..3004952 [+], 1389526459384hypothetical protein 
8BDL_59153004962..3005225 [+], 264526457626PAAR motif family protein  PAAR
9BDL_59163005640..3006059 [-], 420526458752hypothetical protein 
10BDL_59173006079..3006405 [-], 327526458722thioredoxin family protein 
11BDL_59183006878..3007570 [+], 693526459385putative lipoprotein 
12BDL_59193008156..3008881 [-], 726526457342hypothetical protein 
13BDL_5920 (ctaD)3008878..3010473 [-], 1596526458705cytochrome c oxidase, subunit I 
14BDL_59213010878..3011348 [+], 471526458148hypothetical protein 
15BDL_59223011614..3013080 [-], 1467526458526hypothetical protein 
16BDL_59233013440..3013904 [+], 465526458974hypothetical protein 
17BDL_59243015491..3016402 [+], 912526458125coiled stalk of trimeric autotransporter adhesin family protein 
18BDL_59253016469..3017920 [-], 1452526457349phoPQ-activated pathogenicity-related family protein 
19BDL_59263018180..3018578 [-], 399526457037yfaZ family protein 
20BDL_59273019359..3019904 [+], 546526458764fimbrial family protein 
21BDL_59283019969..3020706 [+], 738526458744hypothetical protein 
22BDL_59293021047..3023563 [+], 2517526459203hypothetical protein 
23BDL_59303023556..3024128 [+], 573526458342fimbrial family protein 
24BDL_59313024160..3024849 [+], 690526458871hypothetical protein  TssL
25BDL_59323024852..3026528 [+], 1677526458508ompA family protein  TagL
26BDL_59333026918..3027457 [+], 540526457513hypothetical protein  TssB
27BDL_59343027491..3028990 [+], 1500526457389hypothetical protein  TssC
28BDL_5935 (hcp1)3029190..3029672 [+], 483526457230protein hcp1  TssD
29BDL_59363029869..3030342 [+], 474526457553type VI secretion lipofamily protein  TssJ
30BDL_59373030348..3031697 [+], 1350526458771hypothetical protein  TssK
31BDL_59383031694..3032995 [+], 1302526458912type VI secretion system OmpA/MotB family protein  TssL
32BDL_59393033010..3036918 [+], 3909526457684intracellular multiplication and macrophage-killing family protein  TssM
33BDL_59403037108..3037677 [+], 570526459129hypothetical protein 
34BDL_59413037775..3040528 [+], 2754526456866Rhs element Vgr family protein  TssI
35BDL_59423040536..3040727 [+], 192526457557PAAR motif family protein  PAAR
36BDL_59443040740..3044192 [+], 3453526458632RHS repeat-associated core domain protein 
37BDL_59433044085..3045443 [-], 1359526457158glycosyltransferase family protein 
38BDL_59453045476..3046504 [-], 1029526458411fimbrial family protein 
39BDL_59463046559..3047629 [-], 1071526456964hypothetical protein  TssA
40BDL_59473047648..3048697 [-], 1050526457756hypothetical protein  TssG
41BDL_59483048694..3050574 [-], 1881526457750hypothetical protein  TssF
42BDL_59493050576..3051094 [-], 519526457039lysozyme family protein  TssE
43BDL_59503051081..3051887 [-], 807526457043impE family protein  TagJ
44BDL_59513051919..3052971 [-], 1053526459283hypothetical protein 
45BDL_5952 (clpV)3053401..3056046 [+], 2646526458755type VI secretion ATPase, ClpV1 family  TssH
46BDL_59533056437..3059481 [-], 3045526458420response regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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