SecReT6
I. Summary
SecReT6 ID833 insolico
StrainBurkholderia pseudomallei MSHR305
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_021877
Location3178916..3201332
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BDL_60553174536..3175507 [+], 972526458725zinc-binding dehydrogenase family protein 
2BDL_60563175562..3176488 [+], 927526457766catalytic LigB subunit of aromatic ring-opening dioxygenase family protein 
3BDL_60573176732..3177625 [-], 894526457028bacterial regulatory helix-turn-helix , lysR family protein 
4BDL_60583178916..3182992 [-], 4077526458156intracellular multiplication and macrophage-killing family protein  TssM
5BDL_60593183021..3184286 [-], 1266526458238type VI secretion system OmpA/MotB family protein  TssL
6BDL_60603184375..3185721 [-], 1347526456894hypothetical protein  TssK
7BDL_60613185743..3186246 [-], 504526459038type VI secretion lipofamily protein  TssJ
8BDL_6062 (hcp1)3186354..3186839 [-], 486526457323protein hcp1  TssD
9BDL_60633186956..3188455 [-], 1500526457079hypothetical protein  TssC
10BDL_60643188490..3189071 [-], 582526457757hypothetical protein  TssB
11BDL_6065 (clpV)3189107..3192046 [-], 2940526457404type VI secretion ATPase, ClpV1 family  TssH
12BDL_60663192552..3193298 [+], 747526457739hypothetical protein 
13BDL_60673193295..3194260 [+], 966526457874impE family protein  TagJ
14BDL_60683194301..3194828 [+], 528526457791lysozyme family protein  TssE
15BDL_60693194871..3196748 [+], 1878526458171hypothetical protein  TssF
16BDL_60703196748..3197833 [+], 1086526458608hypothetical protein  TssG
17BDL_60713197830..3198933 [+], 1104526457047hypothetical protein  TssA
18BDL_60723199005..3201332 [+], 2328526458375Rhs element Vgr family protein  TssI
19BDL_60733201364..3203841 [+], 2478526457341pentapeptide repeats family protein 
20BDL_60743203838..3204920 [+], 1083526457040pentapeptide repeats family protein 
21BDL_60753205102..3205761 [+], 660526458880hypothetical protein 
22BDL_60763205802..3206182 [+], 381526458925hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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