SecReT6
I. Summary
SecReT6 ID836 insolico
StrainRhizobium etli bv. mimosae str. Mim
Repliconplasmid pRetMIM1f [Browse all T6SS(s) in this replicon]
AccessionNC_021911
Location491148..515517
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1011
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1REMIM1_PF00458486238..486558 [-], 321528837972cytochrome-c oxidase subunit 2 protein 
2REMIM1_PF00459486566..487087 [-], 522528837973hypothetical protein 
3REMIM1_PF00460487187..487534 [-], 348528837974hypothetical protein 
4REMIM1_PF00461487735..488874 [+], 1140528837975polysaccharide export protein 
5REMIM1_PF00462488871..489782 [-], 912528837976serine/threonine protein kinase-like domain-containing protein 
6REMIM1_PF00463489772..491139 [-], 1368528837977type VI secretion system-associated protein 
7REMIM1_PF00464491148..494624 [-], 3477528837978type VI secretion system IcmF family protein  TssM
8REMIM1_PF00465494624..496162 [-], 1539528837979type VI/VI secretion system outer membrane protein  TssL
9REMIM1_PF00466496159..497499 [-], 1341528837980type VI secretion system-associated protein  TssK
10REMIM1_PF00467497489..498673 [-], 1185528837981type VI protein secretion system FHA domain-containing protein  Fha
11REMIM1_PF00468498684..499685 [-], 1002528837982type VI secretion system-associated protein  TssG
12REMIM1_PF00469499706..501487 [-], 1782528837983type VI secretion system-associated protein  TssF
13REMIM1_PF00470501480..501989 [-], 510528837984type VI secretion system lysozyme-related protein  TssE
14REMIM1_PF00471501982..502812 [-], 831528837985type VI secretion system ImpE family protein  TagJ
15REMIM1_PF00472502809..504197 [-], 1389528837986type VI secretion system-associated protein  TssC
16REMIM1_PF00473504268..505749 [-], 1482528837987type VI secretion system-associated protein  TssC
17REMIM1_PF00474505879..506424 [-], 546528837988type VI secretion system-associated protein  TssB
18REMIM1_PF00475506486..507550 [-], 1065528837989type VI secretion system-associated ImpA-related domain-containing protein  TssA
19REMIM1_PF00476 (clpV1)507886..510540 [+], 2655528837990type VI secretion system ATPase protein ClpV1  TssH
20REMIM1_PF00477510582..511058 [+], 477528837991virulence factor secretion protein  TssD
21REMIM1_PF00478511204..512286 [+], 1083528837992hypothetical protein 
22REMIM1_PF00479512297..513223 [+], 927528837993hypothetical protein 
23REMIM1_PF00480513253..515517 [+], 2265528837994type VI secretion system Rhs element Vgr family protein  TssI
24REMIM1_PF00481515531..516640 [+], 1110528837995hypothetical protein 
25REMIM1_PF00482516637..518160 [+], 1524528837996PAAR motif-containing protein 
26REMIM1_PF00483518181..518891 [+], 711528837997GAD-like domain-containing protein 
27REMIM1_PF00484519013..519663 [+], 651528837998hypothetical protein 
28REMIM1_PF00485519729..519944 [+], 216528837999hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
RbsB , Atu4345

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1REMIM1_CH02415(rbsB-2)2405399..2406328 [+], 930528829165ribose ABC transporter substrate-binding protein RbsB 2 RbsB
2REMIM1_PF00477510582..511058 [+], 477528837991virulence factor secretion protein Atu4345

Download FASTA format files
Proteins        Genes
N/A
N/A