SecReT6
I. Summary
SecReT6 ID839 insolico
StrainParacoccus aminophilus JCM 7686
Repliconplasmid pAMI6 [Browse all T6SS(s) in this replicon]
AccessionNC_022044
Location161600..192618
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1JCM7686_pAMI6p138157485..157991 [+], 507530320890transcriptional regulator, MarR family 
2JCM7686_pAMI6p139158009..160114 [-], 2106530320891serine/threonine protein kinase 
3JCM7686_pAMI6p140160111..160875 [-], 765530320892serine/threonine phosphatase 
4JCM7686_pAMI6p141160872..161621 [-], 750530320893type VI secretion system protein ImpM 
5JCM7686_pAMI6p142161600..165238 [-], 3639530320894type VI secretion system protein ImpL  TssM
6JCM7686_pAMI6p143165235..167085 [-], 1851530320895type VI secretion system protein ImpK  TssL
7JCM7686_pAMI6p144167085..168419 [-], 1335530320896type VI secretion system protein ImpJ  TssK
8JCM7686_pAMI6p145168516..174863 [-], 6348530320897hypothetical protein 
9JCM7686_pAMI6p146175056..177224 [-], 2169530320898peptidase M23 
10JCM7686_pAMI6p147177231..178550 [-], 1320530320899hypothetical protein 
11JCM7686_pAMI6p148178564..178980 [-], 417530320900hypothetical protein 
12JCM7686_pAMI6p149179134..179598 [+], 465530320901hypothetical protein 
13JCM7686_pAMI6p150179611..180255 [+], 645530320902putative biopolymer transport protein 
14JCM7686_pAMI6p151180259..180735 [+], 477530320903hypothetical protein 
15JCM7686_pAMI6p152180732..181133 [+], 402530320904hypothetical protein 
16JCM7686_pAMI6p153181130..182242 [+], 1113530320905hypothetical protein 
17JCM7686_pAMI6p154182255..184999 [-], 2745530320906type VI secretion system ATPase  TssH
18JCM7686_pAMI6p155185022..186026 [-], 1005530320907type VI secretion system protein ImpH  TssG
19JCM7686_pAMI6p156186023..187933 [-], 1911530320908type VI secretion system protein ImpG  TssF
20JCM7686_pAMI6p157187930..188454 [-], 525530320909type VI secretion system protein ImpF  TssE
21JCM7686_pAMI6p158188638..189135 [-], 498530320910type VI secretion system effector, Hcp1 family  TssD
22JCM7686_pAMI6p159189171..190661 [-], 1491530320911type VI secretion system protein ImpC  TssC
23JCM7686_pAMI6p160190661..191179 [-], 519530320912type VI secretion system protein ImpB  TssB
24JCM7686_pAMI6p161191254..192618 [-], 1365530320913type VI secretion system protein ImpA  TssA
25JCM7686_pAMI6p162192658..193977 [-], 1320530320914type VI secretion system protein ImpI  Fha
26JCM7686_pAMI6p163193982..194566 [-], 585530320915hypothetical protein 
27JCM7686_pAMI6p164194903..195448 [+], 546530320916transcriptional regulator, TetR family 
28JCM7686_pAMI6p165195522..196907 [+], 1386530320917RND family efflux transporter 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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