SecReT6
I. Summary
SecReT6 ID841 insolico
StrainKlebsiella pneumoniae JM45
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_022082
Location2962046..2988557
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111101
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1N559_29032957925..2958131 [+], 207530630582hypothetical protein 
2N559_29042958182..2959060 [-], 879530630583putative ARAC-type regulatory protein 
3N559_29072959978..2960571 [-], 594530630584transcriptional regulator, TetR family 
4N559_29082960638..2961357 [+], 720530630585oxidoreductase 
5N559_29092961424..2961918 [-], 495530630586hypothetical protein 
6N559_29102962046..2962573 [-], 528530630587hypothetical protein  TssJ
7N559_29112962566..2963528 [-], 963549555030hypothetical protein  TssG
8N559_29122963615..2965369 [-], 1755530630589hypothetical protein  TssF
9N559_29132965357..2966619 [-], 1263530630590type VI secretion-associated protein, VC_A0119 family  TssA
10N559_29142966635..2967042 [-], 408530630591type VI secretion-associated protein, VC_A0119 family 
11N559_29152967042..2970467 [-], 3426530630592ImcF domain-containing protein  TssM
12N559_29162970451..2971590 [-], 1140530630593hypothetical protein 
13N559_29172971587..2971844 [-], 258530630594PaaR repeat-containing protein  PAAR
14N559_29182971889..2974306 [-], 2418530630595hypothetical protein 
15N559_29192974294..2974824 [-], 531530630596lipoprotein 
16N559_29202974892..2975089 [-], 198549555031lipoprotein 
17N559_29212975086..2975421 [-], 336530630598lipoprotein 
18N559_29222975490..2976020 [-], 531530630599lipoprotein 
19N559_29232976084..2976863 [-], 780530630600hypothetical protein 
20N559_29242976864..2979233 [-], 2370530630601Rhs element Vgr protein  TssI
21N559_29252979235..2981835 [-], 2601549555032putative protease  TssH
22N559_29262982154..2982645 [-], 492530630603type VI secretion system effector, Hcp1 family  TssD
23N559_29272982650..2984356 [-], 1707530630604OmpA/MotB domain-containing protein  TagL
24N559_29282984353..2985042 [-], 690530630605hypothetical protein  TssL
25N559_29292985039..2986382 [-], 1344530630606hypothetical protein  TssK
26N559_29302986392..2987978 [-], 1587530630607EvpB/family type VI secretion protein  TssC
27N559_29312987979..2988557 [-], 579530630608hypothetical protein  TssB
28N559_29322989307..2989564 [+], 258530630609DinI family protein 
29N559_29332990176..2990385 [-], 210530630610hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1N559_29262982154..2982645 [-], 492530630603type VI secretion system effector, Hcp1 family EC042_4529

Download FASTA format files
Proteins        Genes
N/A
N/A