SecReT6
I. Summary
SecReT6 ID843 insolico
StrainListonella anguillarum M3
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_022223
Location1525430..1551972
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1N175_072901521258..1521476 [-], 219537454109XRE family transcriptional regulator 
2N175_072951521577..1521813 [+], 237537454110hypothetical protein 
3N175_073001521806..1523017 [+], 1212537454111integrase 
4N175_073051523014..1523352 [+], 339537455421hypothetical protein 
5N175_073101523361..1523501 [+], 141537455422hypothetical protein 
6N175_073151523876..1524157 [+], 282537455423hypothetical protein 
7N175_073201524561..1524857 [-], 297537454112type VI secretion protein  PAAR
8N175_073251524867..1525433 [-], 567537454113hypothetical protein 
9N175_073301525430..1527427 [-], 1998537454114type IV secretion protein Rhs  TssI
10N175_073351528055..1529488 [+], 1434537454115type VI secretion protein  TssA
11N175_073401529515..1530045 [+], 531537454116hypothetical protein  TssD
12N175_073451530115..1530624 [+], 510537454117type VI secretion protein  TssB
13N175_073501530624..1532105 [+], 1482537454118EvpB family type VI secretion protein  TssC
14N175_073551532152..1533507 [+], 1356537454119type VI secretion protein  TssC
15N175_073601533504..1533920 [+], 417537454120type VI secretion protein  TssE
16N175_073651533913..1535694 [+], 1782537455424type VI secretion protein  TssF
17N175_073701535676..1536659 [+], 984537454121ImpH  TssG
18N175_073751536668..1539274 [+], 2607537454122ATPase  TssH
19N175_073801539417..1540571 [+], 1155537454123D-Ala D-Ala ligase 
20N175_073851540581..1542776 [+], 2196537454124major facilitator transporter 
21N175_073901542773..1543906 [+], 1134537454125hypothetical protein 
22N175_073951543909..1544604 [+], 696537454126hypothetical protein 
23N175_074001544614..1545585 [+], 972537454127hypothetical protein  Fha
24N175_074051545585..1546052 [+], 468537454128hypothetical protein  TssJ
25N175_074101546052..1547368 [+], 1317537454129type VI secretion protein  TssK
26N175_074151547376..1548518 [+], 1143537454130membrane protein  TssL
27N175_074201548520..1551972 [+], 3453537454131hypothetical protein  TssM
28N175_074251551975..1552613 [+], 639537454132protein kinase 
29N175_074301552629..1554518 [+], 1890537454133hypothetical protein 
30N175_074401555205..1556077 [+], 873537454134integrase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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