SecReT6
I. Summary
SecReT6 ID844 insolico
StrainListonella anguillarum M3
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_022224
Location611038..633645
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1N175_17320606121..607818 [-], 1698537457111pseudouridine synthase 
2N175_17325608060..608179 [+], 120537457463hypothetical protein 
3N175_17330608392..609480 [+], 1089537457112hypothetical protein 
4N175_17335609955..610875 [-], 921537457113transposase IS903 
5N175_17340611038..611442 [+], 405537457114type VI secretion protein  TssB
6N175_17345611489..612967 [+], 1479537457115type VI secretion protein  TssC
7N175_17350612970..613407 [+], 438537457116lysozyme  TssE
8N175_17355613414..615183 [+], 1770537457117type VI secretion protein  TssF
9N175_17360615186..616169 [+], 984537457464hypothetical protein  TssG
10N175_17365616174..617646 [+], 1473537457118signal peptide protein  Fha
11N175_17370617649..618128 [+], 480537457119type VI secretion protein  TssJ
12N175_17375618133..619467 [+], 1335537457120hypothetical protein  TssK
13N175_17380619467..620243 [+], 777537457121type IV / VI secretion system , DotU family domain protein  TssL
14N175_17385620258..622885 [+], 2628537457122ATPase AAA  TssH
15N175_17390622882..624450 [+], 1569537457123ATPase AAA  VasH
16N175_17395624447..625106 [+], 660537457124type VI secretion protein 
17N175_17400625116..626513 [+], 1398537457125type VI secretion protein  TssA
18N175_17405626531..630076 [+], 3546537457126type VI secretion protein IcmF  TssM
19N175_17410630134..631429 [+], 1296537457127type VI secretion protein  TssA
20N175_17415631561..633645 [+], 2085537457128type IV secretion protein Rhs  TssI
21N175_17420633621..634442 [+], 822537457129hypothetical protein 
22N175_17425634439..636580 [+], 2142537457130VgrG 
23N175_17430636582..637316 [+], 735537457131nitroreductase 
24N175_17435637339..638082 [+], 744537457132nitroreductase 
25N175_17440638159..638554 [+], 396537457133membrane protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VCA0020 , VCA0018, VCA0017, VCA0017, VC1416, VC1418

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1N175_134202841456..2844716 [-], 3261537455114hypothetical protein VCA0020
2N175_134302845600..2847696 [-], 2097537455116type IV secretion protein Rhs VCA0018
3N175_134352847836..2848354 [-], 519537455117hypothetical protein VCA0017
4N175_16725471403..471921 [-], 519537457008hypothetical protein VCA0017
5N175_17415631561..633645 [+], 2085537457128type IV secretion protein Rhs VC1416
6N175_18440887463..889373 [+], 1911537457295lipase VC1418

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Proteins        Genes

Homology Immunity protein list
VCA0021, VC1419

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1N175_134152840727..2841455 [-], 729537455113hypothetical protein VCA0021
2N175_18450890092..890826 [+], 735537457297hypothetical protein VC1419

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Proteins        Genes
N/A