SecReT6
I. Summary
SecReT6 ID845 insolico
StrainVariovorax paradoxus B4
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_022247
Location235631..284032
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111311111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VAPA_1c02260234305..235492 [+], 1188538392456fumarylacetoacetase-like protein 
2VAPA_1c02270235631..236719 [+], 1089538392457type VI secretion-associated protein, ImpA family  TssA
3VAPA_1c02280236793..237362 [+], 570538392458type VI secretion protein, VC_A0107 family  TssB
4VAPA_1c02290237390..238898 [+], 1509538392459type VI secretion protein, EvpB/VC_A0108 family  TssC
5VAPA_1c02300238948..239430 [+], 483538392460hypothetical protein  TssD
6VAPA_1c02310239537..240403 [+], 867538392461ImpE domain-containing protein  TagJ
7VAPA_1c02320240433..240960 [+], 528538392462putative type VI secretion system lysozyme-like protein  TssE
8VAPA_1c02330240961..242832 [+], 1872538392463type VI secretion protein, VC_A0110 family  TssF
9VAPA_1c02340242829..243980 [+], 1152538392464type VI secretion protein, VC_A0111 family  TssG
10VAPA_1c02350243977..246733 [+], 2757538392465type VI secretion ATPase, ClpV1 family  TssH
11VAPA_1c02360246754..249138 [+], 2385538392466type VI secretion system Vgr family protein  TssI
12VAPA_1c02370249138..249611 [+], 474538392467putative mebrane protein 
13VAPA_1c02380249655..252207 [+], 2553538392468pentapeptide repeat-containing protein 
14VAPA_1c02390252204..253253 [+], 1050538392469pentapeptide repeat-containing protein 
15VAPA_1c02400253312..253974 [+], 663538392470hypothetical protein 
16VAPA_1c02410253987..254367 [+], 381538392471hypothetical protein 
17VAPA_1c02420254423..255241 [-], 819538392472putative serine/threonine phosphatase 
18VAPA_1c02430255234..257159 [-], 1926538392473putative type VI secretion system protein, FHA domain-containing  Fha
19VAPA_1c02440257203..257607 [-], 405538392474hypothetical protein 
20VAPA_1c02450257738..258253 [+], 516538392475type VI secretion lipoprotein, VC_A0113 family  TssJ
21VAPA_1c02460258416..259792 [+], 1377538392476type VI secretion protein, VC_A0114 family  TssK
22VAPA_1c02470259801..261177 [+], 1377538392477type IV/VI secretion system protein, DotU family  TssL
23VAPA_1c02480 (icmF1)261177..264812 [+], 3636538392478type VI secretion protein IcmF  TssM
24VAPA_1c02490264826..266049 [-], 1224538392479transposase 
25VAPA_1c02500266288..267013 [+], 726538392480type VI secretion-associated protein, BMA_A0400 family 
26VAPA_1c02510267039..269192 [+], 2154538392481putative serine/threonine protein kinase 
27VAPA_1c02520270145..270663 [-], 519538392482hypothetical protein 
28VAPA_1c02530270715..272283 [-], 1569538392483transposase, IS66 familly 
29VAPA_1c02540272361..272708 [-], 348538392484putative transposase, IS66 Orf2-like family 
30VAPA_1c02550272705..273106 [-], 402538392485transposase-like protein 
31VAPA_1c02560273209..273418 [-], 210538392486hypothetical protein 
32VAPA_1c02570273507..274505 [-], 999538392487hypothetical protein 
33VAPA_1c02580274590..274979 [-], 390538392488hypothetical protein 
34VAPA_1c02590274976..276370 [-], 1395538392489hypothetical protein 
35VAPA_1c02600276381..277367 [-], 987538392490hypothetical protein 
36VAPA_1c02610277367..278938 [-], 1572538392491hypothetical protein 
37VAPA_1c02620278962..280065 [-], 1104538392492hypothetical protein 
38VAPA_1c02630280046..281197 [-], 1152538392493hypothetical protein 
39VAPA_1c02640281217..281744 [-], 528538392494hypothetical protein  TssI
40VAPA_1c02650281747..284032 [-], 2286538392495type VI secretion system protein, Vgr family  TssI
41VAPA_1c02660285243..285587 [+], 345538392496hypothetical protein 
42VAPA_1c02670285721..286644 [-], 924538392497hypothetical protein 
43VAPA_1c02680286789..287031 [+], 243538392498hypothetical protein 
44VAPA_1c02690287203..288516 [-], 1314538392499transposase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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