SecReT6
I. Summary
SecReT6 ID850 insolico
StrainEscherichia coli LY180
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_022364
Location240399..263882
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121121211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1LY180_01040235508..236230 [+], 723544389054hypothetical protein 
2LY180_01045236227..236694 [-], 468544389055ribonuclease H 
3LY180_01050236750..237490 [+], 741544389056DNA polymerase III subunit epsilon 
4LY180_01060238030..238815 [+], 786544389057hypothetical protein 
5LY180_01065238952..239431 [-], 480544392781hypothetical protein 
6LY180_01070239441..240355 [-], 915544392782membrane protein 
7LY180_01075240399..240881 [-], 483544389058Hcp  TssD
8LY180_01080240905..242257 [-], 1353544389059membrane protein  TssA
9LY180_01085242268..245792 [-], 3525544389060type VI secretion protein IcmF  TssM
10LY180_01090245811..247223 [-], 1413544389061CAD protein  TssA
11LY180_01095247228..247971 [-], 744544389062type VI secretion protein 
12LY180_01100247968..250775 [-], 2808544389063protein disaggregation chaperone  TssH
13LY180_01105250784..251545 [-], 762544389064membrane protein  TssL
14LY180_01110251550..252881 [-], 1332544389065hypothetical protein  TssK
15LY180_01115252884..253408 [-], 525544389066hypothetical protein  TssJ
16LY180_01120253405..254685 [-], 1281544389067type VI secretion system protein ImpI  Fha
17LY180_01125254710..255792 [-], 1083544392783type VI secretion protein  TssG
18LY180_01130255756..257606 [-], 1851544389068type VI secretion protein  TssF
19LY180_01135257610..258023 [-], 414544392784type VI secretion protein  TssE
20LY180_01140258030..259505 [-], 1476544392785type VI secretion protein  TssC
21LY180_01145259556..259780 [-], 225544392786hypothetical protein  TssC
22LY180_01150259815..260315 [-], 501544389069hypothetical protein  TssB
23LY180_01155260743..260886 [+], 144544389070hypothetical protein 
24LY180_01160261013..261531 [+], 519544389071hypothetical protein  TssD
25LY180_01165261741..263882 [+], 2142544389072type IV secretion protein Rhs  TssI
26LY180_01170263958..268007 [+], 4050544392787type IV secretion protein Rhs  PAAR
27LY180_01175267997..268404 [+], 408544392788hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
idrA

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1LY180_01160261013..261531 [+], 519544389071hypothetical protein idrA

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Proteins        Genes
N/A
N/A