SecReT6
I. Summary
SecReT6 ID854 insolico
StrainSalmonella enterica subsp. enterica serovar Thompson str. RM6836
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_022525
Location318749..347212
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1IA1_01390 (mltD)314008..315375 [-], 1368549478357membrane protein 
2IA1_01395315447..316202 [-], 756549478358hydroxyacylglutathione hydrolase 
3IA1_01400316237..316959 [+], 723549478359hypothetical protein 
4IA1_01405316956..317423 [-], 468549478360ribonuclease H 
5IA1_01410317478..318218 [+], 741549478361DNA polymerase III subunit epsilon 
6IA1_01420318749..319804 [-], 1056549478362hypothetical protein  TssA
7IA1_01425319815..320810 [-], 996549478363SPI-6 associated protein  TssG
8IA1_01430320807..322690 [-], 1884549481708type VI secretion protein  TssF
9IA1_01435322706..323200 [-], 495549478364cytoplasmic protein  TssE
10IA1_01440323197..324021 [-], 825549478365hypothetical protein  TagJ
11IA1_01445324008..324910 [-], 903549478366hypothetical protein 
12IA1_01450325278..327917 [+], 2640549478367protein disaggregation chaperone  TssH
13IA1_01455328017..328559 [+], 543549478368type VI secretion protein  TssB
14IA1_01460328583..330091 [+], 1509549478369EvpB family type VI secretion protein  TssC
15IA1_01465330977..331462 [+], 486549478370Hcp1 family type VI secretion system effector  TssD
16IA1_01470331765..332250 [+], 486549478371hypothetical protein  STM0277 (e)
17IA1_01475332235..332618 [+], 384549478372hypothetical protein  STM0278 (i)
18IA1_01480332761..333246 [+], 486549478373Hcp1 family type VI secretion system effector  TssD
19IA1_01485333313..333849 [+], 537549478374outer membrane lipoprotein  TssJ
20IA1_01490333853..335196 [+], 1344549478375type VI secretion protein  TssK
21IA1_01495335193..336497 [+], 1305549478376membrane protein  TssL
22IA1_01500336502..337275 [+], 774549481709membrane protein 
23IA1_01505337466..337909 [+], 444549478377Shiga toxin A subunit 
24IA1_01510337943..341812 [+], 3870549478378membrane protein  TssM
25IA1_01515341812..342579 [+], 768549478379hypothetical protein 
26IA1_01520342622..343092 [+], 471549481710hypothetical protein 
27IA1_01525343695..344081 [+], 387549481711hypothetical protein 
28IA1_01530344108..344626 [+], 519549481712SPI-6 associated protein 
29IA1_01535345023..347212 [+], 2190549478380type VI secretion protein Vgr  TssI
30IA1_01540347236..347682 [+], 447549478381hypothetical protein 
31IA1_01545347701..351789 [+], 4089549481713type IV secretion protein Rhs  PAAR
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EvpC , STM0277, EvpC, ROD_34191, STY2606

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1IA1_01465330977..331462 [+], 486549478370Hcp1 family type VI secretion system effector EvpC
2IA1_01470331765..332250 [+], 486549478371hypothetical protein STM0277
3IA1_01480332761..333246 [+], 486549478373Hcp1 family type VI secretion system effector EvpC
4IA1_151203153269..3153754 [-], 486549480519hypothetical protein ROD_34191
5IA1_118502447125..2447493 [+], 369549482102hypothetical protein STY2606

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Proteins        Genes

Homology Immunity protein list
STM0278, STY2607

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1IA1_01475332235..332618 [+], 384549478372hypothetical protein STM0278
2IA1_118552447493..2448011 [+], 519549480008hypothetical protein STY2607

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Proteins        Genes
N/A