SecReT6
I. Summary
SecReT6 ID858 insolico
StrainKlebsiella pneumoniae CG43
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_022566
Location1455722..1480938
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111101
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1D364_068551450783..1451697 [-], 915550444334transcriptional regulator 
2D364_068601451806..1452567 [+], 7625504443353-oxoacyl-ACP reductase 
3D364_068651452784..1454316 [+], 1533550444336phosphohydrolase 
4D364_068701454515..1455063 [-], 549550444337glutamine amidotransferase 
5D364_068751455722..1456213 [+], 492550444338hypothetical protein  TssB
6D364_068801456256..1457800 [+], 1545550444339EvpB/family type VI secretion protein  TssC
7D364_068851457810..1459153 [+], 1344550444340hypothetical protein  TssK
8D364_068901459150..1459839 [+], 690550444341membrane protein  TssL
9D364_068951459836..1461542 [+], 1707550444342membrane protein  TagL
10D364_069001461547..1462038 [+], 492550444343Hcp family type VI secretion system effector  TssD
11D364_069051462304..1464958 [+], 2655550444344ATPase  TssH
12D364_069101464951..1467329 [+], 2379550444345type IV secretion protein Rhs  TssI
13D364_069151467330..1468109 [+], 780550444346hypothetical protein 
14D364_069201468173..1468703 [+], 531550444347membrane protein 
15D364_069251468691..1471120 [+], 2430550444348hypothetical protein 
16D364_069301471141..1471398 [+], 258550444349hypothetical protein  PAAR
17D364_069351471395..1472534 [+], 1140550444350hypothetical protein 
18D364_069401472518..1475946 [+], 3429550444351type VI secretion protein VasK  TssM
19D364_069451475943..1477535 [+], 1593550447591type VI secretion protein  TssA
20D364_069501477615..1479369 [+], 1755550444352type VI secretion protein ImpG  TssF
21D364_069551479333..1480418 [+], 1086550444353hypothetical protein  TssG
22D364_069601480411..1480938 [+], 528550444354hypothetical protein  TssJ
23D364_069651481067..1481561 [+], 495550444355hypothetical protein 
24D364_069701481628..1482341 [-], 714550444356oxidoreductase 
25D364_069751482415..1483008 [+], 594550444357TetR family transcriptional regulator 
26D364_069801483013..1483768 [-], 7565504443583-oxoacyl-ACP reductase 
27D364_069851483927..1484805 [+], 879550444359AraC family transcriptional regulator 
28D364_069901484856..1485062 [-], 207550444360hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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