SecReT6
I. Summary
SecReT6 ID859 insolico
StrainKlebsiella pneumoniae CG43
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_022566
Location2382023..2403800
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001110011
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1D364_114652378140..2378415 [-], 276550445168membrane protein 
2D364_114702378688..2379272 [+], 585550445169peptidyl-tRNA hydrolase 
3D364_11475 (ychF)2379390..2380481 [+], 1092550445170GTP-binding protein YchF 
4D364_114802380564..2380893 [-], 330550445171hypothetical protein 
5D364_114852380977..2381891 [-], 915550445172rhizopine-binding protein 
6D364_114902382023..2383438 [-], 1416550445173membrane protein  TssA
7D364_114952383458..2383901 [-], 444550445174hypothetical protein  TssE
8D364_115002383904..2384446 [-], 543550445175type VI secretion protein  TssJ
9D364_115052384421..2385467 [-], 1047550445176type VI secretion protein  TssG
10D364_115102385467..2387230 [-], 1764550445177type VI secretion protein ImpG  TssF
11D364_115152387364..2390774 [-], 3411550445178type VI secretion protein VasK  TssM
12D364_115202390758..2391885 [-], 1128550447662type VI secretion protein 
13D364_115252391919..2392185 [-], 267550447663PAAR motif family protein  PAAR
14D364_115302393240..2393362 [-], 123550447664hypothetical protein 
15D364_115352393464..2393796 [-], 333550447665hypothetical protein 
16D364_115402397164..2399650 [-], 2487550445179type IV secretion protein Rhs  TssI
17D364_115502400109..2401806 [-], 1698550445180ompA family protein  TagL
18D364_115552401810..2402463 [-], 654550445181membrane protein  TssL
19D364_115602402460..2403800 [-], 1341550445182hypothetical protein  TssK
20D364_115652404370..2404699 [+], 330550445183hypothetical protein 
21D364_115702404814..2405353 [+], 540550445184hypothetical protein 
22D364_115752405379..2406077 [-], 699550445185RNA pseudouridylate synthase 
23D364_115802406268..2406750 [+], 483550445186cold-shock protein 
24D364_115852406860..2407759 [+], 900550445187LysR family transcriptional regulator 
25D364_115902407734..2408540 [-], 807550445188molybdenum ABC transporter substrate-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1D364_069001461547..1462038 [+], 492550444343Hcp family type VI secretion system effector EC042_4529

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Proteins        Genes
N/A
N/A