SecReT6
I. Summary
SecReT6 ID861 insolico
StrainDesulfovibrio hydrothermalis str. sp nov AM13
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_022579
Location2266880..2314314
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number211111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1DESAM_218742264008..2264100 [-], 93551595754hypothetical protein 
2DESAM_218752264220..2265932 [+], 1713551595755L-lactate transport 
3DESAM_218762266015..2266614 [-], 600551595756hypothetical protein 
4DESAM_218772266652..2266768 [-], 117551595757hypothetical protein 
5DESAM_218782266880..2268496 [+], 1617551595758Type VI secretion-associated protein, VC_A0119 family  TssA
6DESAM_218792268541..2269023 [+], 483551595759Type VI secretion protein, VC_A0107 family  TssB
7DESAM_218802269034..2270518 [+], 1485551595760Type VI secretion protein, EvpB/VC_A0108 family  TssC
8DESAM_21881 (hcpC)2270607..2271089 [+], 483551595761Major exported protein  TssD
9DESAM_218822271142..2271561 [+], 420551595762Type VI secretion system lysozyme-related protein  TssE
10DESAM_218832271565..2273295 [+], 1731551595763Type VI secretion protein, VC_A0110 family  TssF
11DESAM_218842273259..2274302 [+], 1044551595764Type VI secretion protein, VC_A0111 family  TssG
12DESAM_21885 (clpV)2274332..2276962 [+], 2631551595765Protein ClpV1  TssH
13DESAM_218862276988..2279264 [+], 2277551595766Rhs element Vgr protein  TssI
14DESAM_218872279277..2283113 [+], 3837551595767Pentapeptide repeat protein 
15DESAM_218882283110..2284174 [+], 1065551595768Pentapeptide repeat protein 
16DESAM_218892284197..2284820 [+], 624551595769hypothetical protein 
17DESAM_218902284950..2285354 [+], 405551595770hypothetical protein 
18DESAM_218912285369..2286142 [+], 774551595771hypothetical protein 
19DESAM_218922286205..2287752 [-], 1548551595772hypothetical protein  TssC
20DESAM_218932287951..2288529 [+], 579551595773Type VI secretion lipoprotein, VC_A0113 family  TssJ
21DESAM_218942288533..2289912 [+], 1380551595774Type VI secretion protein, VC_A0114 family  TssK
22DESAM_218952289919..2290662 [+], 744551595775Type IV / VI secretion system protein, DotU family  TssL
23DESAM_218962290697..2294209 [+], 3513551595776conserved membrane protein of unknown function  TssM
24DESAM_218972294237..2294962 [+], 726551595777conserved exported protein of unknown function 
25DESAM_218982295090..2297255 [-], 2166551595778Methyl-accepting chemotaxis sensory transducer with Cache sensor 
26DESAM_218992297572..2298654 [-], 1083551595779conserved exported protein of unknown function 
27DESAM_219002298674..2299927 [-], 1254551595780conserved exported protein of unknown function 
28DESAM_219012299851..2300117 [-], 267551595781hypothetical protein 
29DESAM_219022300065..2300202 [+], 138551595782hypothetical protein 
30DESAM_21903 (gatA)2300578..2302041 [-], 1464551595783glutamyl-tRNA(Gln) amidotransferase (subunit A) 
31DESAM_219042302010..2302126 [-], 117551595784hypothetical protein 
32DESAM_21905 (gatC)2302165..2302458 [-], 294551595785Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C 
33DESAM_219062302507..2304651 [-], 2145551595786hypothetical protein 
34DESAM_21907 (dnaK)2304908..2306824 [-], 1917551595787Chaperone protein dnaK 
35DESAM_21908 (grpE)2306913..2307485 [-], 573551595788Protein grpE 
36DESAM_219092307633..2308841 [-], 1209551595789Peptidase M29 aminopeptidase II 
37DESAM_219102309150..2309386 [+], 237551595790FeoA family protein 
38DESAM_219112309387..2311570 [+], 2184551595791Ferrous iron transport protein B 
39DESAM_21912 (clpB)2311690..2314314 [-], 2625551595792protein disaggregation chaperone  TssH
40DESAM_219132314701..2315015 [-], 315551595793hypothetical protein 
41DESAM_21914 (cbpA)2315030..2316022 [-], 993551595794Curved DNA-binding protein 
42DESAM_219152316259..2316990 [-], 732551595795Rhomboid family protein 
43DESAM_219162317410..2319059 [-], 1650551595796Pseudouridine synthase, RluA family 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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