SecReT6
I. Summary
SecReT6 ID864 insolico
StrainBurkholderia pseudomallei NCTC 13179
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_022658
Location1672290..1695519
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111101111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BBK_48501667319..1667576 [+], 258556572574putative tn501 transposition transposase 
2BBK_48511668308..1669093 [+], 786556573261hypothetical protein 
3BBK_48521669142..1669426 [+], 285556574037hypothetical protein 
4BBK_48531669714..1669827 [-], 114556572459hypothetical protein 
5BBK_48541669824..1670423 [-], 600556573494hypothetical protein 
6BBK_48551670621..1671076 [-], 456556572374hemolysin secretion/activation ShlB/FhaC/HecB family protein 
7BBK_48561671258..1672112 [-], 855556573278hypothetical protein 
8BBK_48571672146..1672274 [-], 129556573503hypothetical protein 
9BBK_48581672290..1674494 [-], 2205556572343Rhs element Vgr family protein  TssI
10BBK_4859 (clpV)1674491..1677157 [-], 2667556572187type VI secretion ATPase, ClpV1 family  TssH
11BBK_48601677136..1678590 [-], 1455556573343hypothetical protein  TssG
12BBK_48611678587..1680458 [-], 1872556572834hypothetical protein  TssF
13BBK_48621680463..1681035 [-], 573556574140lysozyme family protein  TssE
14BBK_4863 (hcp1)1681054..1681545 [-], 492556571900protein hcp1  TssD
15BBK_48641681605..1683113 [-], 1509556573055hypothetical protein  TssC
16BBK_48651683106..1683684 [-], 579556574372hypothetical protein  TssB
17BBK_48661683747..1684826 [-], 1080556574253impA-related N-terminal family protein 
18BBK_48671684879..1685097 [-], 219556571908serine/threonine kinase domain protein 
19BBK_48681685040..1687499 [-], 2460556572029kinase domain protein 
20BBK_48691687708..1688640 [-], 933556572134hypothetical protein 
21BBK_48701688637..1692266 [-], 3630556573159intracellular multiplication and macrophage-killing family protein  TssM
22BBK_48711692269..1693585 [-], 1317556572182type VI secretion system OmpA/MotB family protein  TssL
23BBK_48721693601..1695004 [-], 1404556572666hypothetical protein  TssK
24BBK_48731695001..1695519 [-], 519556574273type VI secretion lipofamily protein  TssJ
25BBK_48741696201..1696560 [+], 360556572390hypothetical protein 
26BBK_48751696615..1698051 [+], 1437556573574FHA domain protein  Fha
27BBK_48761698094..1699974 [-], 1881556572637transglutaminase-like superfamily protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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