SecReT6
I. Summary
SecReT6 ID865 insolico
StrainBurkholderia pseudomallei NCTC 13179
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_022658
Location2124642..2156622
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BBK_52272119841..2120386 [+], 546556574436fimbrial family protein 
2BBK_52282120451..2121188 [+], 738556573114gram-negative pili assembly chaperone, C-terminal domain protein 
3BBK_52292121349..2124045 [+], 2697556572766papC N-terminal domain protein 
4BBK_52302124038..2124610 [+], 573556574023fimbrial family protein 
5BBK_52312124642..2125331 [+], 690556572106hypothetical protein  TssL
6BBK_52322125334..2127010 [+], 1677556573960ompA family protein  TagL
7BBK_52332127388..2127927 [+], 540556573410hypothetical protein  TssB
8BBK_52342127961..2129460 [+], 1500556574408hypothetical protein  TssC
9BBK_5235 (hcp1)2129660..2130142 [+], 483556572305protein hcp1  TssD
10BBK_52362130339..2130812 [+], 474556573766type VI secretion lipofamily protein  TssJ
11BBK_52372130818..2132167 [+], 1350556573887hypothetical protein  TssK
12BBK_52382132164..2133465 [+], 1302556572664type VI secretion system OmpA/MotB family protein  TssL
13BBK_52392133480..2137388 [+], 3909556573138intracellular multiplication and macrophage-killing family protein  TssM
14BBK_52402137578..2138147 [+], 570556573202hypothetical protein 
15BBK_52412138245..2140959 [+], 2715556572476Rhs element Vgr family protein  TssI
16BBK_52422141034..2141303 [+], 270556574114PAAR motif family protein  PAAR
17BBK_52442141316..2144768 [+], 3453556573542RHS repeat-associated core domain protein 
18BBK_52432144661..2146019 [-], 1359556573022glycosyltransferase family protein 
19BBK_52452146052..2147080 [-], 1029556574116fimbrial family protein 
20BBK_52462147135..2148205 [-], 1071556572679impA-related N-terminal family protein  TssA
21BBK_52472148224..2149273 [-], 1050556573145hypothetical protein  TssG
22BBK_52482149270..2151150 [-], 1881556573135hypothetical protein  TssF
23BBK_52492151152..2151670 [-], 519556574337lysozyme family protein  TssE
24BBK_52502151657..2152463 [-], 807556572513impE family protein  TagJ
25BBK_52512152495..2153547 [-], 1053556572620hypothetical protein 
26BBK_5252 (clpV)2153977..2156622 [+], 2646556573558type VI secretion ATPase, ClpV1 family  TssH
27BBK_52532157013..2160054 [-], 3042556573929response regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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