SecReT6
I. Summary
SecReT6 ID866 insolico
StrainBurkholderia pseudomallei NCTC 13179
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_022658
Location2279487..2301933
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BBK_53562275107..2276078 [+], 972556574150zinc-binding dehydrogenase family protein 
2BBK_53572276133..2277059 [+], 927556573420catalytic LigB subunit of aromatic ring-opening dioxygenase family protein 
3BBK_53582277303..2278196 [-], 894556572791bacterial regulatory helix-turn-helix , lysR family protein 
4BBK_53592279487..2283563 [-], 4077556574438intracellular multiplication and macrophage-killing family protein  TssM
5BBK_53602283592..2284857 [-], 1266556573238type VI secretion system OmpA/MotB family protein  TssL
6BBK_53612284946..2286292 [-], 1347556572843hypothetical protein  TssK
7BBK_53622286314..2286817 [-], 504556572228type VI secretion lipofamily protein  TssJ
8BBK_5363 (hcp1)2286925..2287410 [-], 486556573107protein hcp1  TssD
9BBK_53642287527..2289026 [-], 1500556572068hypothetical protein  TssC
10BBK_53652289061..2289642 [-], 582556572573hypothetical protein  TssB
11BBK_5366 (clpV)2289678..2292617 [-], 2940556572269type VI secretion ATPase, ClpV1 family  TssH
12BBK_53672293248..2293868 [+], 621556573538hypothetical protein 
13BBK_53682293865..2294830 [+], 966556572630impE family protein  TagJ
14BBK_53692294817..2295398 [+], 582556572202lysozyme family protein  TssE
15BBK_53702295429..2297318 [+], 1890556572899hypothetical protein  TssF
16BBK_53712297318..2298403 [+], 1086556572623hypothetical protein  TssG
17BBK_53722298400..2299533 [+], 1134556572238impA-related N-terminal family protein  TssA
18BBK_53732299716..2300630 [-], 915556572825hypothetical protein 
19BBK_53742300662..2301933 [+], 1272556573500Rhs element Vgr family protein  TssI
20BBK_53752301965..2304442 [+], 2478556574488pentapeptide repeats family protein 
21BBK_53762304439..2305521 [+], 1083556574050pentapeptide repeats family protein 
22BBK_53772305703..2306362 [+], 660556572075hypothetical protein 
23BBK_53782306403..2306783 [+], 381556573638hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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