SecReT6
I. Summary
SecReT6 ID867 insolico
StrainBurkholderia pseudomallei NCTC 13179
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_022658
Location2740822..2767137
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number211211111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BBK_57182736535..2737224 [-], 690556571988CDP-alcohol phosphatidyltransferase family protein 
2BBK_57192737589..2739103 [+], 1515556572912succinate CoA transferase family protein 
3BBK_57202740822..2741760 [+], 939556571969impA-related N-terminal family protein  TssA
4BBK_57212741794..2742342 [+], 549556573678hypothetical protein  TssB
5BBK_57222742339..2743850 [+], 1512556573463hypothetical protein  TssC
6BBK_57232743994..2744521 [+], 528556574278hypothetical protein  TssD
7BBK_57242744601..2745032 [+], 432556573253lysozyme family protein  TssE
8BBK_57252745046..2746908 [+], 1863556573183hypothetical protein  TssF
9BBK_57262746905..2747894 [+], 990556572921hypothetical protein  TssG
10BBK_57272747897..2749177 [+], 1281556571898clp amino terminal domain protein  TssH
11BBK_57282749174..2750763 [+], 1590556574190AAA domain family protein  TssH
12BBK_57292750754..2753045 [+], 2292556574079Rhs element Vgr family protein  TssI
13BBK_57302753211..2755499 [+], 2289556573601Rhs element Vgr family protein  TssI
14BBK_57312755503..2757719 [+], 2217556574429pentapeptide repeats family protein 
15BBK_57322757719..2758789 [+], 1071556574290pentapeptide repeats family protein 
16BBK_57332758792..2759508 [+], 717556574142hypothetical protein 
17BBK_57342759551..2759940 [+], 390556572377hypothetical protein 
18BBK_57352760116..2760538 [+], 423556572701putative lipoprotein 
19BBK_57362760535..2761896 [+], 1362556574058hypothetical protein  TssK
20BBK_57372761922..2763637 [+], 1716556571815type IV/VI secretion system , DotU family domain protein  TssL
21BBK_57382763634..2767137 [+], 3504556574289intracellular multiplication and macrophage-killing family protein  TssM
22BBK_57392767196..2767555 [+], 360556574121hypothetical protein 
23BBK_57402767710..2768000 [+], 291556573617hypothetical protein 
24BBK_57412768225..2768596 [+], 372556574351hypothetical protein 
25BBK_57422769147..2770046 [+], 900556572090alpha/beta hydrolase family protein 
26BBK_57432770269..2771588 [+], 1320556571831glycosyltransferase family 28 N-terminal domain protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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