SecReT6
I. Summary
SecReT6 ID869 insolico
StrainPseudomonas sp. VLB120
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_022738
Location2163444..2182172
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PVLB_098552160004..2162214 [+], 2211557222679glycogen branching enzyme 
2PVLB_098602162346..2162609 [+], 264557222680hypothetical protein  PAAR
3PVLB_098652163444..2165000 [+], 1557557222681hypothetical protein  TssA
4PVLB_098702165034..2165534 [+], 501557222682hypothetical protein  TssB
5PVLB_098752165562..2167034 [+], 1473557222683hypothetical protein  TssC
6PVLB_098802167042..2167464 [+], 423557222684hypothetical protein  TssE
7PVLB_098852167593..2169380 [+], 1788557222685hypothetical protein  TssF
8PVLB_098902169344..2170351 [+], 1008557222686hypothetical protein  TssG
9PVLB_098952170364..2172970 [+], 2607557222687ClpA/B-type protease  TssH
10PVLB_099002172981..2174510 [+], 1530557222688sigma-54 dependent transcriptional regulator  Sfa2
11PVLB_099052174579..2174719 [+], 141557222689hypothetical protein 
12PVLB_099102174738..2175919 [+], 1182557222690hypothetical protein  Fha
13PVLB_099152175924..2176430 [+], 507557222691hypothetical protein  TssJ
14PVLB_099202176427..2177758 [+], 1332557222692hypothetical protein  TssK
15PVLB_099252177764..2178630 [+], 867557222693putative outer membrane protein  TssL
16PVLB_099302178645..2182172 [+], 3528557222694type VI secretion protein IcmF  TssM
17PVLB_099352182172..2182900 [+], 729557222695serine/threonine phosphoprotein phosphatase Stp1  Stp1
18PVLB_099402182897..2183964 [+], 1068557222696serine-threonine kinase Stk1  Stk1
19PVLB_099452183952..2185574 [-], 1623557222697hypothetical protein 
20PVLB_099502185851..2186285 [+], 435557222698hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435 , PSPTO_5435, PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PVLB_169703757341..3757859 [-], 519557224087hemolysin co-regulated protein 1C PSPTO_5435
2PVLB_210004620093..4620611 [+], 519557224893hemolysin co-regulated protein 1C PSPTO_5435
3PVLB_225004965792..4966310 [-], 519557225191hemolysin co-regulated protein 1C PSPTO_5435

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Proteins        Genes
N/A
N/A