SecReT6
I. Summary
SecReT6 ID870 insolico
StrainPseudomonas aeruginosa PA1R
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_022806
Location190404..210290
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PA1R_gp0154185618..186802 [-], 1185558666116Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme 
2PA1R_gp0155186832..187977 [-], 1146558666117Alkanesulfonate monooxygenase 
3PA1R_gp0156187987..188547 [-], 561558666118FMN reductase 
4PA1R_gp0157188707..188973 [-], 267558666119hypothetical protein 
5PA1R_gp0158188950..189198 [+], 249558666120hypothetical protein 
6PA1R_gp0159189209..190294 [-], 1086558666121Sigma-54 dependent transcriptional regulator  Sfa3
7PA1R_gp0160190404..191504 [-], 1101558666122Uncharacterized protein ImpA  TssA
8PA1R_gp0161191501..195316 [-], 3816558666123IcmF-related protein  TssM
9PA1R_gp0162195313..196071 [-], 759558666124Inner membrane protein DotU  TssL
10PA1R_gp0163196089..197381 [-], 1293558666125Uncharacterized protein ImpJ/VasE  TssK
11PA1R_gp0164197480..197956 [-], 477558666126hypothetical protein 
12PA1R_gp0165198165..198710 [+], 546558666127Uncharacterized protein ImpB  TssB
13PA1R_gp0166198733..200217 [+], 1485558666128Uncharacterized protein ImpC  TssC
14PA1R_gp0167200291..200788 [+], 498558666129Putative cytoplasmic protein USSDB7A  TssD
15PA1R_gp0168200801..201226 [+], 426558666130Uncharacterized protein ImpF  TssE
16PA1R_gp0169201210..203003 [+], 1794558666131Protein ImpG/VasA  TssF
17PA1R_gp0170202967..203983 [+], 1017558666132Uncharacterized protein ImpH/VasB  TssG
18PA1R_gp0171203985..206534 [+], 2550558666133ClpB protein  TssH
19PA1R_gp0172206608..207141 [+], 534558666134hypothetical protein 
20PA1R_gp0173207249..208247 [+], 999558666135hypothetical protein 
21PA1R_gp0174208284..210290 [+], 2007558666136VgrG protein  TssI
22PA1R_gp0175210301..210837 [+], 537558666137hypothetical protein 
23PA1R_gp0176210860..211255 [-], 396558666138hypothetical protein 
24PA1R_gp0177211532..212173 [+], 642558666139DNA-binding response regulator, LuxR family 
25PA1R_gp0178212374..213579 [+], 1206558666140putative ABC-type transport protein, periplasmic component 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA5089

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PA1R_gp30163373983..3376220 [-], 2238558668927hypothetical protein PA5089

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Proteins        Genes

Homology Immunity protein list
PA5087, PA5087, PA5087, PA5088

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PA1R_gp30123370821..3371348 [-], 528558668923hypothetical protein PA5087
2PA1R_gp30133371348..3372226 [-], 879558668924hypothetical protein PA5087
3PA1R_gp30143372226..3373104 [-], 879558668925hypothetical protein PA5087
4PA1R_gp30153373104..3373979 [-], 876558668926hypothetical protein PA5088

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Proteins        Genes
N/A