SecReT6
I. Summary
SecReT6 ID873 insolico
StrainPseudomonas aeruginosa PA1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_022808
Location190404..210290
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PA1S_gp0154185618..186802 [-], 1185558672467Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme 
2PA1S_gp0155186832..187977 [-], 1146558672468Alkanesulfonate monooxygenase 
3PA1S_gp0156187987..188547 [-], 561558672469FMN reductase 
4PA1S_gp0157188707..188973 [-], 267558672470hypothetical protein 
5PA1S_gp0158188950..189198 [+], 249558672471hypothetical protein 
6PA1S_gp0159189209..190294 [-], 1086558672472Sigma-54 dependent transcriptional regulator  Sfa3
7PA1S_gp0160190404..191504 [-], 1101558672473Uncharacterized protein ImpA  TssA
8PA1S_gp0161191501..195316 [-], 3816558672474IcmF-related protein  TssM
9PA1S_gp0162195313..196071 [-], 759558672475Inner membrane protein DotU  TssL
10PA1S_gp0163196089..197381 [-], 1293558672476Uncharacterized protein ImpJ/VasE  TssK
11PA1S_gp0164197480..197956 [-], 477558672477hypothetical protein 
12PA1S_gp0165198165..198710 [+], 546558672478Uncharacterized protein ImpB  TssB
13PA1S_gp0166198733..200217 [+], 1485558672479Uncharacterized protein ImpC  TssC
14PA1S_gp0167200291..200788 [+], 498558672480Putative cytoplasmic protein USSDB7A  TssD
15PA1S_gp0168200801..201226 [+], 426558672481Uncharacterized protein ImpF  TssE
16PA1S_gp0169201210..203003 [+], 1794558672482Protein ImpG/VasA  TssF
17PA1S_gp0170202967..203983 [+], 1017558672483Uncharacterized protein ImpH/VasB  TssG
18PA1S_gp0171203985..206534 [+], 2550558672484ClpB protein  TssH
19PA1S_gp0172206608..207141 [+], 534558672485hypothetical protein 
20PA1S_gp0173207249..208247 [+], 999558672486hypothetical protein 
21PA1S_gp0174208284..210290 [+], 2007558672487VgrG protein  TssI
22PA1S_gp0175210301..210837 [+], 537558672488hypothetical protein 
23PA1S_gp0176210860..211255 [-], 396558672489hypothetical protein 
24PA1S_gp0177211532..212173 [+], 642558672490DNA-binding response regulator, LuxR family 
25PA1S_gp0178212374..213579 [+], 1206558672491putative ABC-type transport protein, periplasmic component 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA5089

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PA1S_gp30163373983..3376220 [-], 2238558675278hypothetical protein PA5089

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Proteins        Genes

Homology Immunity protein list
PA5087, PA5087, PA5087, PA5088

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PA1S_gp30123370821..3371348 [-], 528558675274hypothetical protein PA5087
2PA1S_gp30133371348..3372226 [-], 879558675275hypothetical protein PA5087
3PA1S_gp30143372226..3373104 [-], 879558675276hypothetical protein PA5087
4PA1S_gp30153373104..3373979 [-], 876558675277hypothetical protein PA5088

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Proteins        Genes
N/A