SecReT6
I. Summary
SecReT6 ID875 insolico
StrainPseudomonas aeruginosa PA1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_022808
Location5824901..5843864
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PA1S_gp52335820660..5821295 [+], 636558677474hypothetical protein 
2PA1S_gp52345821346..5821822 [-], 477558677475Transcriptional regulator, MarR family 
3PA1S_gp52355821943..5823070 [+], 1128558677476Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic-like protein 
4PA1S_gp52365823126..5823728 [+], 603558677477Glutathione S-transferase, unnamed subgroup 
5PA1S_gp52375824901..5826457 [+], 1557558677478Uncharacterized protein ImpA  TssA
6PA1S_gp52385826493..5826999 [+], 507558677479Uncharacterized protein ImpB  TssB
7PA1S_gp52395827028..5828503 [+], 1476558677480Uncharacterized protein ImpC  TssC
8PA1S_gp52405828516..5828923 [+], 408558677481hypothetical protein  TssE
9PA1S_gp52415829261..5831048 [+], 1788558677482Protein ImpG/VasA  TssF
10PA1S_gp52425831012..5832019 [+], 1008558677483Uncharacterized protein ImpH/VasB  TssG
11PA1S_gp52435832032..5834659 [+], 2628558677484ClpB protein  TssH
12PA1S_gp52445834670..5836181 [+], 1512558677485Sigma-54 dependent transcriptional regulator  Sfa2
13PA1S_gp52455836428..5837621 [+], 1194558677486Uncharacterized protein ImpI/VasC  Fha
14PA1S_gp52465837618..5838133 [+], 516558677487Type VI secretion lipoprotein/VasD  TssJ
15PA1S_gp52475838130..5839461 [+], 1332558677488Uncharacterized protein ImpJ/VasE  TssK
16PA1S_gp52485839464..5840333 [+], 870558677489Outer membrane protein ImpK/VasF, OmpA/MotB domain protein  TssL
17PA1S_gp52495840349..5843864 [+], 3516558677490IcmF-related protein  TssM
18PA1S_gp52505843864..5844592 [+], 729558677491Serine/threonine protein phosphatase  Stp1
19PA1S_gp52515844589..5845578 [+], 990558677492serine-threonine kinase Stk1  Stk1
20PA1S_gp52525845606..5845986 [-], 381558677493Glyoxalase family protein 
21PA1S_gp52535846232..5846693 [+], 462558677494Hemerythrin-like protein 
22PA1S_gp52545846758..5847303 [-], 546558677495GTP cyclohydrolase I 
23PA1S_gp52555847381..5847938 [-], 558558677496Smr domain protein 
24PA1S_gp52565847995..5848315 [-], 321558677497hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435 , PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PA1S_gp32023580494..3581120 [-], 627558675462Secreted protein Hcp PSPTO_5435
2PA1S_gp50935665512..5666030 [-], 519558677334Secreted protein Hcp PSPTO_5435

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Proteins        Genes
N/A
N/A