SecReT6
I. Summary
SecReT6 ID877 insolico
StrainPseudomonas aeruginosa MTB-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023019
Location97440..123781
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1U769_0039592919..96017 [-], 3099564949968serine/threonine protein kinase  PpkA
2U769_0040096025..96753 [-], 729564949969PppA  PppA
3U769_0040596763..97443 [-], 681564949970type VI secretion system protein ImpM  TagF
4U769_0041097440..100973 [-], 3534564949971type VI secretion protein IcmF  TssM
5U769_00415100970..102319 [-], 1350564949972type VI secretion protein  TssL
6U769_00420102326..103660 [-], 1335564949973type VI secretion protein  TssK
7U769_00425103676..104140 [-], 465564949974type VI secretion protein  TssJ
8U769_00430104185..105684 [-], 1500564949975signal peptide protein  Fha
9U769_00435106052..107086 [+], 1035564949976type VI secretion protein ImpA  TssA
10U769_00440107175..107693 [+], 519564949977hypothetical protein  TssB
11U769_00445107706..109202 [+], 1497564949978EvpB family type VI secretion protein  TssC
12U769_00450109278..109766 [+], 489564949979hypothetical protein  TssD
13U769_00455109934..110779 [+], 846564949980virulence protein, SciE type  TagJ
14U769_00460110781..111290 [+], 510564949981hypothetical protein  TssE
15U769_00465111287..113146 [+], 1860564949982type VI secretion system protein ImpG  TssF
16U769_00470113110..114156 [+], 1047564949983type VI secretion protein  TssG
17U769_00475114149..116857 [+], 2709564949984ATPase AAA  TssH
18U769_00480116895..118835 [+], 1941564949985type VI secretion protein ImpA  TssI
19U769_00485118950..119234 [-], 285564949986hypothetical protein  Tsi6 (i)
20U769_00490119247..119480 [-], 234564949987hypothetical protein 
21U769_00495119470..120852 [-], 1383564949988hypothetical protein  Tse6 (e)
22U769_00500120868..121302 [-], 435564949989hypothetical protein 
23U769_00505121556..123781 [+], 2226564949990type VI secretion protein ImpA  TssI
24U769_00510123809..124258 [+], 450564949991hypothetical protein 
25U769_00515124275..125387 [+], 1113564949992hypothetical protein 
26U769_00520125384..126421 [+], 10385649499933-oxoacyl-ACP synthase 
27U769_00525126421..127512 [+], 1092564949994hypothetical protein 
28U769_00530127523..128443 [+], 921564949995hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA0085 , PA0091, PA0093, PA0095, PA3484, PA2774, PA2702, PA2685, PA2684, PA1844

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1U769_00450109278..109766 [+], 489564949979hypothetical protein PA0085
2U769_00480116895..118835 [+], 1941564949985type VI secretion protein ImpA PA0091
3U769_00495119470..120852 [-], 1383564949988hypothetical protein PA0093
4U769_00505121556..123781 [+], 2226564949990type VI secretion protein ImpA PA0095
5U769_073701587226..1588452 [-], 1227564951360hypothetical protein PA3484
6U769_111502364788..2365375 [+], 588564952107hypothetical protein PA2774
7U769_116452466532..2467008 [-], 477564952202hypothetical protein PA2702
8U769_117252484760..2486829 [+], 2070564952218type VI secretion protein ImpA PA2685
9U769_117302486879..2490832 [+], 3954564952219hypothetical protein PA2684
10U769_164453580630..3581094 [+], 465564953172hypothetical protein PA1844

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Proteins        Genes

Homology Immunity protein list
PA0092, PA3485, PA2775, PA2703, Tsi5, PA1845

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1U769_00485118950..119234 [-], 285564949986hypothetical protein PA0092
2U769_073651586792..1587229 [-], 438564951359hypothetical protein PA3485
3U769_111452364346..2364783 [+], 438564952106hypothetical protein PA2775
4U769_116402466289..2466522 [-], 234564952201hypothetical protein PA2703
5U769_117352490829..2491020 [+], 192564952220hypothetical protein Tsi5
6U769_164403580070..3580588 [+], 519564953171hypothetical protein PA1845

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Proteins        Genes
N/A