SecReT6
I. Summary
SecReT6 ID878 insolico
StrainPseudomonas aeruginosa MTB-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023019
Location2905546..2924623
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1U769_133452902137..2902250 [-], 114564952540hypothetical protein 
2U769_133502902257..2903462 [-], 1206564952541ABC transporter permease 
3U769_133552903663..2904304 [-], 642564952542transcriptional regulator 
4U769_133602904581..2904976 [+], 396564952543hypothetical protein 
5U769_133652904999..2905535 [-], 537564952544hypothetical protein 
6U769_133702905546..2907552 [-], 2007564952545type IV secretion protein Rhs  TssI
7U769_133752907552..2907740 [-], 189564952546hypothetical protein 
8U769_133772907900..2908472 [-], 573564952547hypothetical protein 
9U769_133802908494..2911043 [-], 2550564952548ATPase  TssH
10U769_133852911045..2912061 [-], 1017564952549type VI secretion protein  TssG
11U769_133902912025..2913818 [-], 1794564952550type VI secretion system protein ImpG  TssF
12U769_133952913802..2914227 [-], 426564952551type VI secretion protein  TssE
13U769_134002914240..2914737 [-], 498564952552hypothetical protein  TssD
14U769_134052914811..2916295 [-], 1485564952553EvpB family type VI secretion protein  TssC
15U769_134102916318..2916863 [-], 546564952554type VI secretion protein  TssB
16U769_134152917071..2917547 [+], 477564952555type VI secretion protein 
17U769_134202917607..2918938 [+], 1332564952556type VI secretion protein  TssK
18U769_134252918956..2919714 [+], 759564952557type VI secretion system protein ImpK  TssL
19U769_134302919711..2923526 [+], 3816564952558type VI secretion system protein ImpL  TssM
20U769_134352923523..2924623 [+], 1101564952559type VI secretion protein  TssA
21U769_134402924733..2925818 [+], 1086564952560Fis family transcriptional regulator  Sfa3
22U769_134452925931..2926320 [+], 390564952561hypothetical protein 
23U769_134502926480..2927040 [+], 561564952562FMN reductase 
24U769_134552927050..2928195 [+], 1146564952563alkanesulfonate monooxygenase 
25U769_134602928225..2929409 [+], 1185564952564monooxygenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA5089

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1U769_278055992350..5994587 [-], 2238564955425hypothetical protein PA5089

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Proteins        Genes

Homology Immunity protein list
PA5087, PA5087, PA5088

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1U769_278025989901..5990593 [-], 693564955422hypothetical protein PA5087
2U769_278035990590..5991471 [-], 882564955423hypothetical protein PA5087
3U769_278045991468..5992349 [-], 882564955424hypothetical protein PA5088

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Proteins        Genes
N/A