SecReT6
I. Summary
SecReT6 ID879 insolico
StrainPseudomonas aeruginosa MTB-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023019
Location3762344..3781313
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1U769_173503757893..3758213 [+], 321564953348hypothetical protein 
2U769_173553758270..3758827 [+], 558564953349DNA mismatch repair protein MutS 
3U769_173603758905..3759450 [+], 546564953350GTP cyclohydrolase 
4U769_173653759515..3759976 [-], 462564953351hypothetical protein 
5U769_173703760222..3760602 [+], 381564953352hypothetical protein 
6U769_173753760630..3761619 [-], 990564953353serine/threonine protein kinase  Stk1
7U769_173803761616..3762344 [-], 729564953354protein phosphatase  Stp1
8U769_173853762344..3765871 [-], 3528564953355type VI secretion protein VasK  TssM
9U769_173903765887..3766756 [-], 870564953356OmpA family protein  TssL
10U769_173953766759..3768090 [-], 1332564953357type VI secretion protein  TssK
11U769_174003768087..3768593 [-], 507564953358type VI secretion protein  TssJ
12U769_174053768599..3769792 [-], 1194564953359signal peptide protein  Fha
13U769_174103769810..3769950 [-], 141564953360type VI secretion protein 
14U769_174203770039..3771550 [-], 1512564953361Fis family transcriptional regulator  Sfa2
15U769_174253771561..3774194 [-], 2634564953362ATPase AAA  TssH
16U769_174303774201..3775208 [-], 1008564953363type VI secretion protein  TssG
17U769_174353775172..3776959 [-], 1788564953364type VI secretion protein  TssF
18U769_174403776963..3777280 [-], 318564953365hypothetical protein  PAAR
19U769_174453777291..3777698 [-], 408564953366hypothetical protein  TssE
20U769_174503777711..3779186 [-], 1476564953367type VI secretion protein  TssC
21U769_174553779215..3779721 [-], 507564953368hypothetical protein  TssB
22U769_174603779757..3781313 [-], 1557564953369type VI secretion protein ImpA  TssA
23U769_174653782486..3783088 [-], 603564953370glutathione S-transferase 
24U769_174703783144..3784310 [-], 1167564953371GntR family transcriptional regulator 
25U769_174753784392..3784868 [+], 477564953372MarR family transcriptional regulator 
26U769_174803784919..3785554 [-], 636564953373hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435 , PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1U769_182003940420..3940938 [+], 519564953518hypothetical protein PSPTO_5435
2U769_289906248526..6249044 [-], 519564955660hypothetical protein PSPTO_5435

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Proteins        Genes
N/A
N/A