SecReT6
I. Summary
SecReT6 ID88 insolico
StrainRalstonia eutropha JMP134
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_007347
Location1843323..1878926
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Reut_A17041838599..1839657 [+], 105973541393ferredoxin:oxidoreductase FAD/NAD(P)-binding subunit 
2Reut_A17051839703..1840620 [+], 91873541394catechol dioxygenase, N-terminal 
3Reut_A17061840739..1841272 [+], 53473541395hypothetical protein 
4Reut_A17071841356..1842618 [-], 126373541396hypothetical protein 
5Reut_A17081843323..1844483 [+], 116173541397potassium efflux system protein 
6Reut_A17091844616..1845830 [-], 121573541398major facilitator transporter 
7Reut_A17101845827..1846192 [-], 36673541399endoribonuclease L-PSP 
8Reut_A17111846305..1847138 [+], 83473541400transcriptional regulator TrmB 
9Reut_A17121847369..1847650 [-], 28273541401helix-turn-helix, Fis-type 
10Reut_A17131847968..1848882 [-], 91573541402hypothetical protein 
11Reut_A17141848935..1850086 [-], 115273541403ImpA-like protein  TssA
12Reut_A17151850094..1854242 [-], 414973541404hypothetical protein  TssM
13Reut_A17161854280..1855032 [-], 75373541405hypothetical protein  TssL
14Reut_A17171855058..1856386 [-], 132973541406hypothetical protein  TssK
15Reut_A17181856453..1856965 [-], 51373541407hypothetical protein 
16Reut_A17191856997..1858430 [-], 143473541408Sodium:dicarboxylate symporter 
17Reut_A17201858427..1859128 [-], 70273541409aspartate racemase 
18Reut_A17211859151..1860425 [-], 127573541410Sodium:dicarboxylate symporter 
19Reut_A17221860446..1861489 [-], 104473541411extracellular solute-binding protein 
20Reut_A17231861486..1861746 [-], 26173541412hypothetical protein 
21Reut_A17241861754..1862140 [-], 38773541413hypothetical protein  PAAR
22Reut_A17251862145..1862861 [-], 71773541414hypothetical protein 
23Reut_A17261862870..1864798 [-], 192973541415Rhs element Vgr protein  TssI
24Reut_A17271864803..1867499 [-], 269773541416ATPase AAA  TssH
25Reut_A17281867512..1868576 [-], 106573541417hypothetical protein  TssG
26Reut_A17291868540..1870300 [-], 176173541418hypothetical protein  TssF
27Reut_A17301870293..1870757 [-], 46573541419hypothetical protein  TssE
28Reut_A17311870799..1871281 [-], 48373541420hypothetical protein  TssD
29Reut_A17321871383..1872885 [-], 150373541421hypothetical protein  TssC
30Reut_A17331872929..1873477 [-], 54973541422hypothetical protein  TssB
31Reut_A17341873980..1874753 [+], 77473541423two component LuxR family transcriptional regulator 
32Reut_A17351874921..1876354 [-], 143473541424hypothetical protein 
33Reut_A17361876363..1878354 [-], 199273541425PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 
34Reut_A17371878453..1878926 [-], 47473541426hypothetical protein 
35Reut_A17381878941..1879990 [-], 105073541427hypothetical protein 
36Reut_A17391879980..1881125 [-], 114673541428secretion protein HlyD 
37Reut_A17401881118..1882671 [-], 155473541429RND efflux system, outer membrane lipoprotein, NodT 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation