SecReT6
I. Summary
SecReT6 ID880 insolico
StrainPseudomonas aeruginosa MTB-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023019
Location4856552..4882755
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1U769_226454851929..4853446 [-], 1518564954403membrane protein 
2U769_226504853722..4855305 [-], 1584564954404hypothetical protein 
3U769_226554855489..4856550 [-], 1062564954405hypothetical protein 
4U769_226604856552..4860289 [-], 3738564954406type VI secretion protein VasK  TssM
5U769_226654860305..4861747 [-], 1443564954407membrane protein  TssA
6U769_226704861735..4862418 [-], 684564954408hypothetical protein 
7U769_226754862415..4863989 [-], 1575564954409Fis family transcriptional regulator 
8U769_226804864004..4866571 [-], 2568564954410ATPase AAA  TssH
9U769_226854867057..4867560 [+], 504564954411hypothetical protein  TssB
10U769_226904867748..4869229 [+], 1482564954412type VI secretion protein  TssC
11U769_226954869238..4869666 [+], 429564954413hypothetical protein  TssE
12U769_227004869688..4871454 [+], 1767564954414type VI secretion protein  TssF
13U769_227054871418..4872437 [+], 1020564954415type VI secretion protein  TssG
14U769_227104872434..4873798 [+], 1365564954416hypothetical protein  Fha
15U769_227154873798..4874817 [+], 1020564954417hypothetical protein  TssJ
16U769_227204874814..4876151 [+], 1338564954418type VI secretion protein  TssK
17U769_227254876153..4877052 [+], 900564954419hypothetical protein  TssL
18U769_227304877186..4878007 [+], 822564954420dCMP deaminase 
19U769_227354878098..4879540 [-], 1443564954421hypothetical protein 
20U769_227404880092..4880610 [+], 519564954422hypothetical protein  TssD
21U769_227454880710..4882755 [+], 2046564954423type IV secretion protein Rhs  TssI
22U769_227504882776..4884131 [+], 1356564954424hypothetical protein 
23U769_227554884133..4884489 [+], 357564954425type IV secretion protein Rhs 
24U769_227604884494..4885693 [+], 1200564954426hypothetical protein 
25U769_227624885701..4886150 [+], 450564954427hypothetical protein 
26U769_227644886205..4887185 [+], 981564954428hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
idrA

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1U769_227404880092..4880610 [+], 519564954422hypothetical protein idrA

Download FASTA format files
Proteins        Genes
N/A
N/A