SecReT6
I. Summary
SecReT6 ID881 insolico
StrainAcinetobacter baumannii ZW85-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023028
Location2353802..2384504
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1P795_108102348876..2350054 [-], 1179565638777MFS transporter 
2P795_108152350054..2350536 [-], 483565638778guanine deaminase (Guanase) (guanine aminase) (guanine aminohydrolase) (GAH) (GDEase) 
3P795_108202350552..2351181 [-], 630565638779ankyrin repeat-containing protein 
4P795_108252351372..2352223 [+], 852565638780LysR family transcriptional regulator 
5P795_108302352226..2353119 [-], 894565638781D-alanyl-D-alanine carboxypeptidase 
6P795_108352353187..2353789 [-], 603565638782hypothetical protein 
7P795_108402353802..2354608 [-], 807565638783aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B  TssL
8P795_108452354626..2355990 [-], 1365565638784hypothetical protein  TssK
9P795_108502356007..2357101 [-], 1095565638785hypothetical protein  TssA
10P795_108552357125..2359803 [-], 2679565638786Putative ClpA/B-type chaperone  TssH
11P795_108602360026..2360289 [-], 264565638787hypothetical protein  PAAR
12P795_108652360306..2361073 [-], 768565638788OmpA/MotB domain protein  TagL
13P795_108702361076..2362035 [-], 960565638789hypothetical protein 
14P795_108752362073..2365897 [-], 3825565638790type VI secretion protein IcmF  TssM
15P795_108802365928..2367340 [-], 1413565638791hypothetical protein 
16P795_108852367337..2368335 [-], 999565638792type VI secretion protein  TssG
17P795_108902368299..2370110 [-], 1812565638793hypothetical protein  TssF
18P795_108952370127..2370603 [-], 477565638794type VI secretion system lysozyme-related protein  TssE
19P795_109002370683..2371186 [-], 504565638795hypothetical protein  TssD
20P795_109052371236..2372717 [-], 1482565638796hypothetical protein  TssC
21P795_109102372710..2373213 [-], 504565638797type VI secretion protein  TssB
22P795_109152373230..2373922 [-], 693565638798hypothetical protein 
23P795_109202374569..2374757 [+], 189565638799hypothetical protein 
24P795_109252374735..2375139 [+], 405565638800hypothetical protein 
25P795_109302375216..2375344 [+], 129565638801hypothetical protein 
26P795_109352375655..2376560 [-], 906565638802hypothetical protein 
27P795_109402376572..2376802 [-], 231565638803hypothetical protein 
28P795_109452376879..2377361 [-], 483565638804hypothetical protein 
29P795_109502377365..2378156 [-], 792565638805hypothetical protein 
30P795_109552378157..2380946 [-], 2790565638806hypothetical protein 
31P795_109602380939..2381877 [-], 939565638807hypothetical protein 
32P795_109652381874..2383994 [-], 2121565638808rhs element Vgr family protein  TssI
33P795_109702384097..2384504 [-], 408565638809hypothetical protein  TssI
34P795_109752384650..2384826 [+], 177565638810hypothetical protein 
35P795_109802385148..2386092 [+], 945565638811taurine transport system permease tauC 
36P795_109852386092..2386973 [+], 882565638812nitrate transport ATP-binding protein NrtC 
37P795_109902387025..2388047 [-], 1023565638813Putative aliphatic sulfonates-binding protein precursor 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1P795_109002370683..2371186 [-], 504565638795hypothetical protein A1S_1296

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Proteins        Genes
N/A
N/A