SecReT6
I. Summary
SecReT6 ID883 insolico
StrainCronobacter sakazakii CMCC 45402
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023032
Location27903..82237
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111311111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1P262_0003824147..25301 [-], 1155565643495multidrug resistance protein D 
2P262_0003925537..25989 [-], 453565643496hypothetical protein 
3P262_0004026044..26172 [+], 129565643497hypothetical protein 
4P262_0004126590..26724 [-], 135565643498hypothetical protein 
5P262_0004226972..27106 [+], 135565643499hypothetical protein 
6P262_0004327384..27878 [+], 495565643500hypothetical protein 
7P262_0004427903..28409 [+], 507565643501hypothetical protein  TssJ
8P262_0004528434..29777 [+], 1344565643502hypothetical protein  TssK
9P262_0004729795..31030 [+], 1236565643503hypothetical protein  TssL
10P262_0004831032..34649 [+], 3618565643504type VI secretion system protein ImpL  TssM
11P262_0004934666..35376 [+], 711565643505hypothetical protein 
12P262_0005135386..36408 [+], 1023565643506hypothetical protein  TssA
13P262_0005236472..37008 [+], 537565643507hypothetical protein  TssB
14P262_0005337012..38511 [+], 1500565643508hypothetical protein  TssC
15P262_0005538558..39004 [+], 447565643509hypothetical protein 
16P262_0005639045..39446 [+], 402565643510hypothetical protein 
17P262_0005839652..40134 [+], 483565643511hypothetical protein  TssD
18P262_0006140182..40550 [+], 369565643512hypothetical protein 
19P262_0006340571..40954 [+], 384565643513hypothetical protein 
20P262_0006441251..43182 [+], 1932565643514hypothetical protein  Fha
21P262_0006543179..43973 [+], 795565643515hypothetical protein 
22P262_0006643992..44996 [+], 1005565643516hypothetical protein 
23P262_0006845022..45855 [+], 834565643517hypothetical protein  TagJ
24P262_0006945848..46420 [+], 573565643518hypothetical protein  TssE
25P262_0007046423..48294 [+], 1872565643519hypothetical protein  TssF
26P262_0007148291..49334 [+], 1044565643520hypothetical protein  TssG
27P262_0007349409..49726 [+], 318565643521hypothetical protein 
28P262_0007749773..52388 [+], 2616565643522hypothetical protein  TssH
29P262_0008052419..53852 [+], 1434565643523serine/threonine protein kinase 
30P262_0008153977..55443 [+], 1467565643524hypothetical protein 
31P262_0008255440..56201 [+], 762565643525hypothetical protein 
32P262_0008556342..58543 [+], 2202565643526Rhs element Vgr protein  TssI
33P262_0008859227..61767 [+], 2541565643527hypothetical protein 
34P262_0009061764..62834 [+], 1071565643528pentapeptide repeat protein 
35P262_0009262844..63449 [+], 606565643529hypothetical protein 
36P262_0009363455..63847 [+], 393565643530hypothetical protein 
37P262_0009664099..66678 [+], 2580565643531hypothetical protein  TssI
38P262_0009767167..67370 [+], 204565643532hypothetical protein 
39P262_0009968016..68441 [+], 426565643533hypothetical protein 
40P262_0010168455..72879 [+], 4425565643534hypothetical protein  rhsA (e)
41P262_0010372867..73451 [+], 585565643535hypothetical protein 
42P262_0010473902..74879 [+], 978565643536hypothetical protein 
43P262_0010675030..76067 [+], 1038565643537hypothetical protein 
44P262_0010776067..77065 [+], 999565643538hypothetical protein 
45P262_0010877291..78064 [+], 774565643539hypothetical protein 
46P262_0010978843..78992 [+], 150565643540hypothetical protein 
47P262_0011079087..79605 [+], 519565643541hypothetical protein 
48P262_0011179589..79849 [-], 261565643542hypothetical protein 
49P262_0011380117..80248 [+], 132565643543hypothetical protein 
50P262_0011480297..82237 [+], 1941565643544hypothetical protein  TssI
51P262_0011582234..82665 [+], 432565643545hypothetical protein 
52P262_0011882668..87227 [+], 4560565643546hypothetical protein  PAAR
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA3455 , SMA2263, ECL_01567

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1P262_p109376054..76620 [+], 567565631949hypothetical protein SMA3455
2P262_0005839652..40134 [+], 483565643511hypothetical protein SMA2263
3P262_0010168455..72879 [+], 4425565643534hypothetical protein ECL_01567

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Proteins        Genes
N/A
N/A