SecReT6
I. Summary
SecReT6 ID884 insolico
StrainAchromobacter xylosoxidans NBRC 15126 = ATCC 27061
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023061
Location3586629..3624953
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111311111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AX27061_32673582496..3585666 [-], 3171568128382hypothetical protein 
2AX27061_32683585650..3586636 [-], 987568128383hypothetical protein 
3AX27061_32693586629..3589322 [-], 2694568128384VgrG protein  TssI
4AX27061_32703589339..3592023 [-], 2685568128385ClpB protein  TssH
5AX27061_32713592043..3593134 [-], 1092568128386Uncharacterized protein ImpH/VasB  TssG
6AX27061_32723593107..3594945 [-], 1839568128387Protein ImpG/VasA  TssF
7AX27061_32733594999..3595484 [-], 486568128388Uncharacterized protein ImpF  TssE
8AX27061_32743595555..3596058 [-], 504568128389Uncharacterized protein ImpD  TssD
9AX27061_32753596099..3597589 [-], 1491568128390Uncharacterized protein ImpC  TssC
10AX27061_32763597582..3598046 [-], 465568128391Uncharacterized protein ImpB  TssB
11AX27061_32773598174..3598845 [-], 672568128392TPR repeat protein 
12AX27061_32783599299..3599664 [+], 366568128393hypothetical protein  TssJ
13AX27061_32793599742..3601088 [+], 1347568128394Uncharacterized protein ImpJ/VasE  TssK
14AX27061_32803601147..3601926 [+], 780568128395putative transmembrane protein  TssL
15AX27061_32813602003..3607129 [+], 5127568128396VgrG protein  TssI
16AX27061_32823607110..3607751 [+], 642568128397hypothetical protein 
17AX27061_32833607793..3610093 [-], 2301568128398hypothetical protein 
18AX27061_32843610086..3610853 [-], 768568128399hypothetical protein 
19AX27061_32853610858..3611832 [-], 975568128400hypothetical protein 
20AX27061_32863611843..3614719 [-], 2877568128401VgrG protein  TssI
21AX27061_32873614746..3615630 [-], 885568128402hypothetical protein 
22AX27061_32883615948..3616673 [+], 726568128403putative transmembrane protein 
23AX27061_32893616744..3618144 [+], 1401568128404putative TRANSMEMBRANE PROTEIN 
24AX27061_32903618168..3621974 [+], 3807568128405IcmF-related protein  TssM
25AX27061_32913621971..3622954 [+], 984568128406hypothetical protein 
26AX27061_32923622957..3623751 [+], 795568128407Outer membrane protein  TagL
27AX27061_32933623841..3624953 [-], 1113568128408Uncharacterized protein ImpA  TssA
28AX27061_32943625129..3625380 [+], 252568128409Orf69 
29AX27061_32953625417..3626577 [+], 1161568128410hypothetical protein  PAAR
30AX27061_32963626665..3626910 [+], 246568128411hypothetical protein 
31AX27061_32973626911..3627702 [+], 792568128412Methionine aminopeptidase 
32AX27061_32983627803..3629023 [+], 1221568128413hypothetical protein 
33AX27061_32993629194..3629835 [+], 642568128414putative glutathione S-transferase-like protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BCAL0343

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1AX27061_32743595555..3596058 [-], 504568128389Uncharacterized protein ImpD BCAL0343

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Proteins        Genes
N/A
N/A