SecReT6
I. Summary
SecReT6 ID885 insolico
StrainPseudomonas sp. TKP
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023064
Location4153253..4172407
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1U771_188554148977..4151052 [-], 2076568140714PTS sugar transporter subunit IIC 
2U771_188604151355..4151684 [+], 330568140715DNA repair ATPase 
3U771_188654151692..4152528 [-], 837568140716serine/threonine protein kinase  Stk1
4U771_188704152525..4153256 [-], 732568140717protein phosphatase  Stp1
5U771_188754153253..4156615 [-], 3363568140718type VI secretion protein VasK  TssM
6U771_188804156631..4157497 [-], 867568140719OmpA family protein  TssL
7U771_188854157503..4158831 [-], 1329568140720type VI secretion protein  TssK
8U771_188904158833..4159327 [-], 495568140721type VI secretion protein  TssJ
9U771_188954159324..4160514 [-], 1191568140722signal peptide protein  Fha
10U771_189004160530..4160661 [-], 132568140723type VI secretion protein 
11U771_189054160689..4162215 [-], 1527568140724Fis family transcriptional regulator  Sfa2
12U771_189104162212..4164650 [-], 2439568140725ATPase AAA  TssH
13U771_189154164663..4165670 [-], 1008568140726type VI secretion protein  TssG
14U771_189204165634..4167421 [-], 1788568140727type VI secretion protein  TssF
15U771_189254167411..4167812 [-], 402568140728hypothetical protein  TssE
16U771_189304167827..4169302 [-], 1476568140729type VI secretion protein  TssC
17U771_189354169329..4169826 [-], 498568140730hypothetical protein  TssB
18U771_189404169861..4171330 [-], 1470568140731type VI secretion protein ImpA  TssA
19U771_189454171892..4172407 [+], 516568140732hypothetical protein  TssD
20U771_189504172461..4173282 [-], 822568140733hypothetical protein 
21U771_189554173389..4173883 [+], 495568140734hypothetical protein 
22U771_189604173965..4175176 [-], 1212568140735membrane protein 
23U771_189654175290..4176099 [-], 810568140736diaminopimelate epimerase 
24U771_189704176178..4176696 [+], 519568140737adenylylsulfate kinase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1U771_189454171892..4172407 [+], 516568140732hypothetical protein PSPTO_5435

Download FASTA format files
Proteins        Genes
N/A
N/A