SecReT6
I. Summary
SecReT6 ID886 insolico
StrainPseudomonas sp. TKP
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023064
Location6792971..6813378
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1U771_310706788593..6791604 [-], 3012568143103serine/threonine protein kinase  PpkA
2U771_310756791601..6792320 [-], 720568143104PppA  PppA
3U771_310806792321..6792974 [-], 654568143105type VI secretion system protein ImpM  TagF
4U771_310856792971..6796471 [-], 3501568143106type VI secretion protein IcmF  TssM
5U771_310906796468..6797757 [-], 1290568143107type VI secretion protein  TssL
6U771_310956797764..6799098 [-], 1335568143108type VI secretion protein  TssK
7U771_311006799117..6799626 [-], 510568143109type VI secretion protein  TssJ
8U771_311056799678..6801033 [-], 1356568143110type VI secretion protein  Fha
9U771_311106801428..6802447 [+], 1020568143111type VI secretion protein ImpA  TssA
10U771_311156802502..6803008 [+], 507568143112hypothetical protein  TssB
11U771_311206803011..6804507 [+], 1497568143113EvpB family type VI secretion protein  TssC
12U771_311256804683..6805171 [+], 489568143114hypothetical protein  TssD
13U771_311306805262..6805780 [+], 519568143115hypothetical protein  TssE
14U771_311356805777..6807636 [+], 1860568143116type VI secretion system protein ImpG  TssF
15U771_311406807600..6808643 [+], 1044568143117type VI secretion protein  TssG
16U771_311456808636..6811290 [+], 2655568143118ATPase AAA  TssH
17U771_311506811438..6813378 [+], 1941568143119type VI secretion protein ImpA  TssI
18U771_311556813394..6813828 [+], 435568143120hypothetical protein 
19U771_311606813841..6818295 [+], 4455568143121type IV secretion protein Rhs  PAAR
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA0085 , PA0091

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1U771_311256804683..6805171 [+], 489568143114hypothetical protein PA0085
2U771_311506811438..6813378 [+], 1941568143119type VI secretion protein ImpA PA0091

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Proteins        Genes
N/A
N/A