SecReT6
I. Summary
SecReT6 ID888 insolico
StrainPseudomonas aeruginosa LES431
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023066
Location3166274..3186160
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1T223_149553162865..3162978 [-], 114568154071hypothetical protein 
2T223_149603162985..3164190 [-], 1206568154072iron ABC transporter substrate-binding protein 
3T223_149653164391..3165032 [-], 642568154073transcriptional regulator 
4T223_149703165309..3165704 [+], 396568154074hypothetical protein 
5T223_149753165727..3166263 [-], 537568154075hypothetical protein 
6T223_149803166274..3168280 [-], 2007568154076type IV secretion protein Rhs  TssI
7T223_149853168317..3169384 [-], 1068568154077hypothetical protein 
8T223_149903169423..3169956 [-], 534568154078hypothetical protein 
9T223_149953170030..3172579 [-], 2550568154079ATPase  TssH
10T223_150003172581..3173597 [-], 1017568154080type VI secretion protein  TssG
11T223_150053173561..3175354 [-], 1794568154081type VI secretion system protein ImpG  TssF
12T223_150103175338..3175763 [-], 426568154082type VI secretion protein  TssE
13T223_150153175776..3176273 [-], 498568154083hypothetical protein  TssD
14T223_150203176347..3177831 [-], 1485568154084EvpB family type VI secretion protein  TssC
15T223_150253177854..3178399 [-], 546568154085type VI secretion protein  TssB
16T223_150303178629..3179084 [+], 456568154086type VI secretion protein 
17T223_150353179144..3180475 [+], 1332568154087type VI secretion protein  TssK
18T223_150403180493..3181251 [+], 759568154088type VI secretion system protein ImpK  TssL
19T223_150453181248..3185063 [+], 3816568154089type VI secretion system protein ImpL  TssM
20T223_150503185060..3186160 [+], 1101568154090type VI secretion protein  TssA
21T223_150553186270..3187355 [+], 1086568154091Fis family transcriptional regulator  Sfa3
22T223_150603187591..3187857 [+], 267568154092hypothetical protein 
23T223_150653188017..3188577 [+], 561568154093FMN reductase 
24T223_150703188587..3189732 [+], 1146568154094alkanesulfonate monooxygenase 
25T223_150753189762..3190946 [+], 1185568154095monooxygenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA5089

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1T223_280156010228..6012465 [-], 2238568156613hypothetical protein PA5089

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Proteins        Genes

Homology Immunity protein list
PA5087

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1T223_280106009349..6010224 [-], 876568156612hypothetical protein PA5087

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Proteins        Genes
N/A