SecReT6
I. Summary
SecReT6 ID89 insolico
StrainRalstonia eutropha JMP134
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_007348
Location2003017..2040567
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Reut_B52481998268..1998471 [+], 20473539071hypothetical protein 
2Reut_B52491998568..1999140 [+], 57373539072transmembrane protein 
3Reut_B52501999144..2000082 [-], 93973539073LysR family transcriptional regulator 
4Reut_B52512000235..2001251 [+], 101773539074hypothetical protein 
5Reut_B52522001297..2003006 [+], 171073539075hypothetical protein 
6Reut_B52532003017..2003916 [-], 90073539076hypothetical protein 
7Reut_B52542004256..2005080 [-], 82573539077NAD-dependent deacetylase 
8Reut_B52552005077..2005436 [-], 36073539078hypothetical protein 
9Reut_B52562005379..2005708 [-], 33073539079hypothetical protein 
10Reut_B52572005753..2005989 [-], 23773539080hypothetical protein 
11Reut_B52582006216..2008549 [+], 233473539081patatin 
12Reut_B52592008750..2009184 [-], 43573539082hypothetical protein  TssE
13Reut_B52602009181..2011922 [-], 274273539083ATPase AAA  TssH
14Reut_B52612011957..2012442 [-], 48673539084hypothetical protein  TssD
15Reut_B52622012449..2014176 [-], 172873539085OmpA/MotB protein  TagL
16Reut_B52632014181..2014828 [-], 64873539086hypothetical protein  TssL
17Reut_B52642014825..2016171 [-], 134773539087hypothetical protein  TssK
18Reut_B52652016287..2017834 [-], 154873539088hypothetical protein  TssC
19Reut_B52662017859..2018365 [-], 50773539089hypothetical protein  TssB
20Reut_B52672018664..2021132 [+], 246973539090Rhs element Vgr protein  TssI
21Reut_B52682021156..2022934 [+], 177973539091hypothetical protein 
22Reut_B52692022931..2023839 [+], 90973539092signal peptide protein 
23Reut_B52702024056..2025384 [+], 132973539093hypothetical protein 
24Reut_B52712025768..2029238 [+], 347173539094hypothetical protein  TssM
25Reut_B52722029244..2030818 [+], 157573539095hypothetical protein  TssA
26Reut_B52732030836..2032662 [+], 182773539096hypothetical protein  TssF
27Reut_B52742032659..2033708 [+], 105073539097hypothetical protein  TssG
28Reut_B52752033721..2034359 [+], 63973539098hypothetical protein  TssJ
29Reut_B52762034417..2035232 [-], 81673539099regulatory protein IclR 
30Reut_B52772035363..2036346 [+], 98473539100hypothetical protein 
31Reut_B52782036393..2038744 [+], 235273539101cytochrome P450:oxidoreductase FAD/NAD(P)-binding protein 
32Reut_B52792039056..2040567 [+], 151273539102aldehyde dehydrogenase 
33Reut_B52802040820..2041776 [+], 95773539103LysR family transcriptional regulator 
34Reut_B52812041853..2042293 [-], 44173539104hypothetical protein 
35Reut_B52822042312..2043484 [-], 117373539105hypothetical protein 
36Reut_B52832043481..2044272 [-], 79273539106enoyl-CoA hydratase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Reut_B52612011957..2012442 [-], 48673539084hypothetical protein EC042_4529

Download FASTA format files
Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation