SecReT6
I. Summary
SecReT6 ID890 insolico
StrainPseudomonas monteilii SB3078
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023075
Location2808176..2855712
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112211111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1X969_135052807078..2807545 [-], 468568182382hypothetical protein 
2X969_135102807581..2808165 [-], 585568182383hypothetical protein 
3X969_135152808176..2810032 [-], 1857568182384type IV secretion protein Rhs  TssI
4X969_135202810745..2812202 [+], 1458568182385hypothetical protein 
5X969_135252812199..2812495 [+], 297568182386hypothetical protein 
6X969_135302812833..2813135 [+], 303568182387hypothetical protein 
7X969_135352813226..2813378 [+], 153568182388hypothetical protein 
8X969_135402813505..2813768 [+], 264568182389hypothetical protein 
9X969_135452813894..2814025 [+], 132568182390hypothetical protein 
10X969_135552814756..2815313 [+], 558568182391hypothetical protein 
11X969_135602815623..2816738 [-], 1116568182392ADP-ribosylglycohydrolase 
12X969_135652817528..2818277 [+], 750568182393hypothetical protein 
13X969_135702818342..2818881 [+], 540568182394type VI secretion protein  TssB
14X969_135752818896..2820398 [+], 1503568182395EvpB family type VI secretion protein  TssC
15X969_135802820425..2820907 [+], 483568182396type VI secretion protein  TssE
16X969_135852820907..2822727 [+], 1821568182397ImpG  TssF
17X969_135902822691..2823761 [+], 1071568182398ImpH  TssG
18X969_135952823758..2826343 [+], 2586568182399ATPase  TssH
19X969_136002826368..2827090 [+], 723568182400hypothetical protein  TssJ
20X969_136052827087..2828430 [+], 1344568182401type VI secretion protein  TssK
21X969_136102828427..2829143 [+], 717568182402type VI secretion system protein ImpK  TssL
22X969_136152829174..2832977 [+], 3804568182403ImcF-like family protein  TssM
23X969_136202832974..2833882 [+], 909568182404type VI secretion system protein ImpM 
24X969_136252833879..2836374 [+], 2496568182405membrane protein  TssM
25X969_136302836518..2837036 [+], 519568182406Hcp1 family type VI secretion system effector  TssD
26X969_136352837132..2838229 [+], 1098568182407ImpA-like protein  TssA
27X969_136402838384..2840900 [+], 2517568182408excinuclease ABC subunit A 
28X969_136452841068..2841661 [+], 594568182409hypothetical protein 
29X969_136502841779..2842654 [-], 876568182410transporter 
30X969_136552842979..2844283 [+], 1305568182411MFS transporter 
31X969_136602844391..2845353 [-], 963568182412bifunctional glyoxylate/hydroxypyruvate reductase B 
32X969_136652845365..2846657 [-], 1293568182413MFS transporter 
33X969_136702846715..2847665 [-], 9515681824142-dehydro-3-deoxygluconokinase 
34X969_136752847658..2848446 [-], 789568182415AP endonuclease 
35X969_136802848514..2849533 [-], 1020568182416transcriptional regulator 
36X969_136852849806..2851050 [-], 1245568182417alcohol dehydrogenase 
37X969_136902851063..2852847 [-], 1785568182418GMC family oxidoreductase 
38X969_136952852851..2853591 [-], 741568182419gluconate 2-dehydrogenase 
39X969_137002853992..2854840 [+], 849568182420hypothetical protein  TssL
40X969_137052854855..2855712 [+], 858568185227hypothetical protein  TssI
41X969_137102856297..2857625 [+], 1329568182421hypothetical protein 
42X969_137152857658..2859889 [+], 2232568182422hypothetical protein 
43X969_137202859905..2860378 [+], 474568182423curlin 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Psyr_4965

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1X969_136302836518..2837036 [+], 519568182406Hcp1 family type VI secretion system effector Psyr_4965

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Proteins        Genes
N/A
N/A