SecReT6
I. Summary
SecReT6 ID891 insolico
StrainPseudomonas monteilii SB3101
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023076
Location2758054..2805590
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112211111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1X970_131502756956..2757423 [-], 468568187760hypothetical protein 
2X970_131552757459..2758043 [-], 585568187761hypothetical protein 
3X970_131602758054..2759910 [-], 1857568187762type IV secretion protein Rhs  TssI
4X970_131652760623..2762080 [+], 1458568187763hypothetical protein 
5X970_131702762077..2762373 [+], 297568187764hypothetical protein 
6X970_131752762711..2763013 [+], 303568187765hypothetical protein 
7X970_131802763104..2763256 [+], 153568187766hypothetical protein 
8X970_131852763383..2763646 [+], 264568187767hypothetical protein 
9X970_131902763772..2763903 [+], 132568187768hypothetical protein 
10X970_132002764634..2765191 [+], 558568187769hypothetical protein 
11X970_132052765501..2766616 [-], 1116568187770ADP-ribosylglycohydrolase 
12X970_132102767406..2768155 [+], 750568187771hypothetical protein 
13X970_132152768220..2768759 [+], 540568187772type VI secretion protein  TssB
14X970_132202768774..2770276 [+], 1503568187773EvpB family type VI secretion protein  TssC
15X970_132252770303..2770785 [+], 483568187774type VI secretion protein  TssE
16X970_132302770785..2772605 [+], 1821568187775ImpG  TssF
17X970_132352772569..2773639 [+], 1071568187776ImpH  TssG
18X970_132402773636..2776221 [+], 2586568187777ATPase  TssH
19X970_132452776246..2776968 [+], 723568187778hypothetical protein  TssJ
20X970_132502776965..2778308 [+], 1344568187779type VI secretion protein  TssK
21X970_132552778305..2779021 [+], 717568187780type VI secretion system protein ImpK  TssL
22X970_132602779052..2782855 [+], 3804568187781ImcF-like family protein  TssM
23X970_132652782852..2783760 [+], 909568187782type VI secretion system protein ImpM 
24X970_132702783757..2786252 [+], 2496568187783membrane protein  TssM
25X970_132752786396..2786914 [+], 519568187784Hcp1 family type VI secretion system effector  TssD
26X970_132802787010..2788107 [+], 1098568187785ImpA-like protein  TssA
27X970_132852788262..2790778 [+], 2517568187786excinuclease ABC subunit A 
28X970_132902790946..2791539 [+], 594568187787hypothetical protein 
29X970_132952791657..2792532 [-], 876568187788transporter 
30X970_133002792857..2794161 [+], 1305568187789MFS transporter 
31X970_133052794269..2795231 [-], 963568187790bifunctional glyoxylate/hydroxypyruvate reductase B 
32X970_133102795243..2796535 [-], 1293568187791MFS transporter 
33X970_133152796593..2797543 [-], 9515681877922-dehydro-3-deoxygluconokinase 
34X970_133202797536..2798324 [-], 789568187793AP endonuclease 
35X970_133252798392..2799411 [-], 1020568187794transcriptional regulator 
36X970_133302799684..2800928 [-], 1245568187795alcohol dehydrogenase 
37X970_133352800941..2802725 [-], 1785568187796GMC family oxidoreductase 
38X970_133402802729..2803469 [-], 741568187797gluconate 2-dehydrogenase 
39X970_133452803870..2804718 [+], 849568187798hypothetical protein  TssL
40X970_133502804733..2805590 [+], 858568190589hypothetical protein  TssI
41X970_133552806175..2807503 [+], 1329568187799hypothetical protein 
42X970_133602807536..2809767 [+], 2232568187800hypothetical protein 
43X970_133652809783..2810256 [+], 474568187801curlin 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Psyr_4965

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1X970_132752786396..2786914 [+], 519568187784Hcp1 family type VI secretion system effector Psyr_4965

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Proteins        Genes
N/A
N/A