SecReT6
I. Summary
SecReT6 ID892 insolico
StrainLeisingera methylohalidivorans DSM 14336 strain MB2, DSM 14336
Repliconplasmid [Browse all T6SS(s) in this replicon]
AccessionNC_023136
Location233027..261944
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1METH_23370228758..229330 [+], 573568288011flagellar motor protein MotB  TagL
2METH_23375229375..231543 [+], 2169568288012serine/threonine protein kinase 
3METH_23380231625..232347 [-], 723568288013Ser/Thr protein phosphatase 
4METH_23385232347..233027 [-], 681568288014type VI secretion protein 
5METH_23390233027..236599 [-], 3573568288015type VI secretion protein  TssM
6METH_23395236596..238029 [-], 1434568288016OmpA family protein  TssL
7METH_23400238044..239342 [-], 1299568288017type VI secretion protein  TssK
8METH_23405239432..240907 [-], 1476568288018signal peptide protein  Fha
9METH_23410240916..241218 [-], 303568288019hypothetical protein  PAAR
10METH_23415241234..241851 [-], 618568288020hypothetical protein 
11METH_23420241852..243963 [-], 2112568288021type VI secretion protein  TssI
12METH_23425244028..248992 [-], 4965568288022hypothetical protein  TssC
13METH_23430248985..249839 [-], 855568288023voltage-gated sodium channel 
14METH_23435249909..251156 [-], 1248568288024hypothetical protein 
15METH_23440251192..253915 [-], 2724568288025ATPase AAA  TssH
16METH_23445253917..254972 [-], 1056568288026type VI secretion protein  TssG
17METH_23450254936..256813 [-], 1878568288027type VI secretion protein  TssF
18METH_23455256815..257312 [-], 498568288028type VI secretion protein  TssE
19METH_23460257305..258108 [-], 804568288029virulence protein, SciE type  TagJ
20METH_23465258200..258688 [-], 489568288030hypothetical protein  TssD
21METH_23470258768..260264 [-], 1497568288031EvpB family type VI secretion protein  TssC
22METH_23475260280..260795 [-], 516568288032hypothetical protein  TssB
23METH_23480260874..261944 [-], 1071568288033type VI secretion protein  TssA
24METH_23485262131..262976 [+], 846568288034hypothetical protein 
25METH_23490263041..263460 [+], 420568288035hypothetical protein 
26METH_23495263464..264081 [+], 618568288036flagellar motor protein MotA 
27METH_23500264098..264508 [+], 411568288037biopolymer transporter ExbD 
28METH_23505264505..264912 [+], 408568288038transport energizing protein, ExbD/TolR family 
29METH_23510264909..266462 [+], 1554568288039hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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