SecReT6
I. Summary
SecReT6 ID894 insolico
StrainPseudomonas aeruginosa SCV20265
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023149
Location3125735..3145696
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1SCV20265_29413122446..3123651 [-], 1206568309680ABC-type Fe3+ transport system, periplasmic component 
2SCV20265_29423123852..3124493 [-], 642568309681DNA-binding response regulator, LuxR family 
3SCV20265_29433124770..3125165 [+], 396568309682Hypothetical protein 
4SCV20265_29443125188..3125724 [-], 537568309683Phophatidylinositol-4-phosphate 5-kinase 
5SCV20265_29453125735..3127630 [-], 1896568309684VgrG protein  TssI
6SCV20265_29463127745..3128212 [-], 468568309685Hypothetical protein 
7SCV20265_29473129566..3132115 [-], 2550568309686ClpB protein  TssH
8SCV20265_29483132117..3133133 [-], 1017568309687Uncharacterized protein ImpH/VasB  TssG
9SCV20265_29493133097..3134890 [-], 1794568309688Protein ImpG/VasA  TssF
10SCV20265_29503134874..3135299 [-], 426568309689Uncharacterized protein ImpF  TssE
11SCV20265_29513135312..3135809 [-], 498568309690Putative cytoplasmic protein USSDB7A  TssD
12SCV20265_29523135883..3137367 [-], 1485568309691Uncharacterized protein ImpC  TssC
13SCV20265_29533137390..3137935 [-], 546568309692Uncharacterized protein ImpB  TssB
14SCV20265_29543138144..3138620 [+], 477568309693hypothetical protein 
15SCV20265_29553138617..3138739 [-], 123568309694Hypothetical protein 
16SCV20265_29563138719..3140011 [+], 1293568309695Uncharacterized protein ImpJ/VasE  TssK
17SCV20265_29573140029..3140787 [+], 759568309696Inner membrane protein DotU  TssL
18SCV20265_29583140784..3144599 [+], 3816568309697IcmF-related protein  TssM
19SCV20265_29593144596..3145696 [+], 1101568309698Uncharacterized protein ImpA  TssA
20SCV20265_29603145806..3146891 [+], 1086568309699Sigma-54 dependent transcriptional regulator  Sfa3
21SCV20265_29613147127..3147393 [+], 267568309700Hypothetical protein 
22SCV20265_29623147553..3148113 [+], 561568309701FMN reductase 
23SCV20265_29633148123..3149268 [+], 1146568309702Alkanesulfonate monooxygenase 
24SCV20265_29643149298..3150482 [+], 1185568309703Acyl-CoA dehydrogenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA5089

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1SCV20265_57616140563..6142800 [-], 2238568312490putative phospholipase protein PA5089

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Proteins        Genes
N/A
N/A