SecReT6
I. Summary
SecReT6 ID895 insolico
StrainPseudomonas aeruginosa SCV20265
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023149
Location3987826..4006801
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1SCV20265_37353983375..3983695 [+], 321568310472Hypothetical protein 
2SCV20265_37363983752..3984309 [+], 558568310473Smr domain protein 
3SCV20265_37373984387..3984932 [+], 546568310474GTP cyclohydrolase Itype 1 
4SCV20265_37383984997..3985458 [-], 462568310475Hemerythrin-like protein 
5SCV20265_37393985755..3986084 [+], 330568310476Glyoxalase family protein 
6SCV20265_37403986112..3987101 [-], 990568310477Serine/threonine protein kinase  Stk1
7SCV20265_37413987098..3987826 [-], 729568310478Protein serine/threonine phosphatase PrpC, regulation of stationary phase  Stp1
8SCV20265_37423987826..3991353 [-], 3528568310479IcmF-related protein  TssM
9SCV20265_37433991369..3992238 [-], 870568310480Outer membrane protein ImpK/VasF  TssL
10SCV20265_37443992241..3993572 [-], 1332568310481Uncharacterized protein ImpJ/VasE  TssK
11SCV20265_37453993569..3994084 [-], 516568310482Type VI secretion lipoprotein/VasD  TssJ
12SCV20265_37463994081..3995274 [-], 1194568310483Uncharacterized protein ImpI/VasC  Fha
13SCV20265_37473995292..3995432 [-], 141568310484Hypothetical protein 
14SCV20265_37483995521..3997032 [-], 1512568310485Sigma-54 dependent transcriptional regulator  Sfa2
15SCV20265_37493997043..3999670 [-], 2628568310486ClpB protein  TssH
16SCV20265_37503999683..4000690 [-], 1008568310487Uncharacterized protein ImpH/VasB  TssG
17SCV20265_37514000654..4002441 [-], 1788568310488Protein ImpG/VasA  TssF
18SCV20265_37524002779..4003186 [-], 408568310489hypothetical protein  TssE
19SCV20265_37534003199..4004674 [-], 1476568310490Uncharacterized protein ImpC  TssC
20SCV20265_37544004703..4005209 [-], 507568310491Uncharacterized protein ImpB  TssB
21SCV20265_37554005245..4006801 [-], 1557568310492Uncharacterized protein ImpA  TssA
22SCV20265_37564007973..4008575 [-], 603568310493Glutathione S-transferase 
23SCV20265_37574008631..4009797 [-], 1167568310494Transcriptional regulator, GntR family / Aspartate aminotransferase 
24SCV20265_37584009879..4010355 [+], 477568310495Transcriptional regulator, MarR family 
25SCV20265_37594010406..4011041 [-], 636568310496Hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435 , PSPTO_5435, PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1SCV20265_0270296129..296647 [-], 519568307009Secreted protein Hcp PSPTO_5435
2SCV20265_39074165908..4166426 [+], 519568310642Secreted protein Hcp PSPTO_5435
3SCV20265_59916384578..6385096 [-], 519568312718Secreted protein Hcp PSPTO_5435

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Proteins        Genes
N/A
N/A