SecReT6
SecReT6 ID897 experimental
StrainRhizobium leguminosarum bv. trifolii
Replicon [Browse all T6SS(s) in this replicon]
AccessionAF361470
Location744..17137
CommentHost-specific inhibition of infection of pea plants
Functionanti-eukaryotic; effector translocation
T6SS TypeType i; subtype i5
experimental Experimental investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001011211
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1impA (impA)744..1820 [+], 107716326486ImpA  TssA
2impB (impB)1857..2402 [+], 54616326475ImpB  TssB
3impC (impC)2533..4014 [+], 148216326479ImpC  TssC
4impD (impD)4081..5469 [+], 138916326480ImpD  TssC
5impE (impE)5466..6296 [+], 83116326481ImpE  TagJ
6impF (impF)6289..6798 [+], 51016326482ImpF  TssE
7impG (impG)6791..8572 [+], 178216326483ImpG  TssF
8impH (impH)8593..9594 [+], 100216326484ImpH  TssG
9impI (impI)9606..10805 [+], 120016326459ImpI  Fha
10impJ (impJ)10795..12135 [+], 134116326460ImpJ  TssK
11impK (impK)12132..13664 [+], 153316326461ImpK  TssL
12impL (impL)13661..17137 [+], 347716326462ImpL  TssM
13impM (impM)17148..18521 [+], 137416326463ImpM 
14impN (impN)18511..19425 [+], 91516326464ImpN 
151632648519422..20561 [-], 114016326485putative capsular polysaccharide exporter outer membrane protein 
161632646520824..21171 [+], 34816326465hypothetical protein 
171632646621192..21854 [+], 66316326466hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
   RbsB (AAL14902)
Homology effector (effector protein label, when available)
Homology immunity protein (immunity protein label, when available)
(1) Bladergroen MR et al. (2003). Infection-Blocking Genes of a Symbiotic Rhizobium leguminosarum Strain That Are Involved in Temperature-Dependent Protein Secretion. Mol Plant Microbe Interact. 16(1):53-64. [PudMed:12580282] experimental
 
experimental This literature contains experimental investigation