SecReT6
SecReT6 ID898
StrainKlebsiella pneumoniae str. Kp52.145
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionFO834906
Location3477664..3505840
Comment
FunctionN/A
.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001110011
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BN49_33483472745..3473791 [-], 1047597516007- 
2BN49_3349 (ychH)3474012..3474287 [-], 276597516008- 
3BN49_3350 (pth)3474560..3475144 [+], 585597516009- 
4BN49_3351 (engD)3475262..3476353 [+], 1092597516010- 
5BN49_33523476436..3476765 [-], 330597516011- 
6BN49_33533476850..3477137 [-], 288597516012- 
7BN49_33543477065..3477532 [-], 468597516013- 
8BN49_33553477664..3479079 [-], 1416597516014-  TssA
9BN49_33563479099..3479542 [-], 444597516015-  TssE
10BN49_33573479545..3480033 [-], 489597516016-  TssJ
11BN49_33583480062..3481153 [-], 1092597516017-  TssG
12BN49_33593481108..3482871 [-], 1764597516018-  TssF
13BN49_33603483005..3483811 [-], 807597516019-  TssM
14BN49_33613483723..3486395 [-], 2673597516020-  TssM
15BN49_33623486501..3487646 [-], 1146597516021- 
16BN49_33633487766..3488029 [-], 264597516022-  PAAR
17BN49_33643488119..3489096 [-], 978597516023- 
18BN49_3365 (sel1A)3489311..3490375 [-], 1065597516024- 
19BN49_3366 (sel1B)3490413..3491693 [-], 1281597516025- 
20BN49_3367 (sel1C)3491731..3493002 [-], 1272597516026- 
21BN49_3368 (pld)3493002..3494873 [-], 1872597516027- 
22BN49_3369 (sel1D)3495042..3496115 [-], 1074597516028- 
23BN49_3370 (sel1E)3496153..3497397 [-], 1245597516029- 
24BN49_33713497427..3497990 [-], 564597516030- 
25BN49_33723497987..3498940 [-], 954597516031- 
26BN49_33733498991..3501690 [-], 2700597516032-  TssI
27BN49_33743502149..3503846 [-], 1698597516033-  TagL
28BN49_33753503850..3504503 [-], 654597516034-  TssL
29BN49_33763504500..3505840 [-], 1341597516035-  TssK
30BN49_33773506409..3506738 [+], 330597516036- 
31BN49_33783506853..3507392 [+], 540597516037- 
32BN49_33793507418..3508209 [-], 792597516038- 
33BN49_33803508307..3508789 [+], 483597516039- 
34BN49_33813508899..3509798 [+], 900597516040- 
35BN49_33823509773..3510582 [-], 810597516041- 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Lery LM et al. (2014). Comparative analysis of Klebsiella pneumoniae genomes identifies a phospholipase D family protein as a novel virulence factor. BMC Biol. 12(1):41. [PudMed:24885329] experimental in_silico
 
experimental This literature contains experimental investigation
in_silico This literature contains bioinformatics investigation