SecReT6
SecReT6 ID899
StrainKlebsiella pneumoniae str. Kp52.145
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionFO834906
Location2564540..2589406
Comment
FunctionN/A
T6SS TypeType i; subtype i2
.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121211101
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BN49_24582559601..2560515 [-], 915597515122- 
2BN49_24592560624..2561385 [+], 762597515123- 
3BN49_24602561602..2563134 [+], 1533597515124- 
4BN49_24612563333..2563899 [-], 567597515125- 
5BN49_24622564540..2565031 [+], 492597515126-  TssB
6BN49_24632565068..2566612 [+], 1545597515127-  TssC
7BN49_24642566622..2567965 [+], 1344597515128-  TssK
8BN49_24652567962..2568651 [+], 690597515129-  TssL
9BN49_24662568648..2570354 [+], 1707597515130- 
10BN49_24672570344..2570625 [+], 282597515131-  TssD
11BN49_24682570653..2570850 [+], 198597515132-  TssD
12BN49_24692571115..2573769 [+], 2655597515133-  TssH
13BN49_24702573762..2574139 [+], 378597515134-  TssI
14BN49_24712574161..2576257 [+], 2097597515135-  TssI
15BN49_24722576259..2577083 [+], 825597515136- 
16BN49_24732577297..2579231 [+], 1935597515137- 
17BN49_24742579584..2581023 [+], 1440597515138- 
18BN49_24752581020..2584415 [+], 3396597515139-  TssM
19BN49_24762584412..2586004 [+], 1593597515140-  TssA
20BN49_24772586083..2587837 [+], 1755597515141-  TssF
21BN49_24782587801..2588886 [+], 1086597515142-  TssG
22BN49_24792588906..2589406 [+], 501597515143-  TssJ
23BN49_24802589533..2590027 [+], 495597515144- 
24BN49_24812590094..2590768 [-], 675597515145- 
25BN49_24822590842..2591435 [+], 594597515146- 
26BN49_24832591440..2592195 [-], 756597515147- 
27BN49_24842592354..2593232 [+], 879597515148- 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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