SecReT6
SecReT6 ID900
StrainKlebsiella pneumoniae str. Kp52.145
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionFO834906
Location950009..972195
Comment
FunctionN/A
.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001110011
ComponentTssGTssJTssKTssM
Number1211
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BN49_0922 (cbiQ)945115..945792 [+], 678597513592- 
2BN49_0923 (cbiO)945801..946625 [+], 825597513593- 
3BN49_0924 (cobQ)946622..948145 [+], 1524597513594- 
4BN49_0925 (cobU)948139..948684 [+], 546597513595- 
5BN49_0926 (cobT)948728..949783 [+], 1056597513596- 
6BN49_0927950009..950410 [-], 402597513597-  TssE
7BN49_0928950438..950698 [-], 261597513598-  TssJ
8BN49_0929 (insD)950730..951635 [-], 906597513599- 
9BN49_0930951593..951847 [-], 255597513600- 
10BN49_0931951807..952007 [-], 201597513601- 
11BN49_0932952051..952311 [-], 261597513602-  TssJ
12BN49_0933952292..953374 [-], 1083597513603-  TssG
13BN49_0934953338..955098 [-], 1761597513604-  TssF
14BN49_0935955255..955851 [-], 597597513605- 
15BN49_0936955863..956993 [-], 1131597513606- 
16BN49_0937957144..957404 [-], 261597513607-  PAAR
17BN49_0938957477..957899 [-], 423597513608-  TssA
18BN49_0939957862..961227 [-], 3366597513609-  TssM
19BN49_0940961224..962363 [-], 1140597513610- 
20BN49_0941962669..963040 [-], 372597513611- 
21BN49_0942963149..964246 [-], 1098597513612- 
22BN49_0943964262..965713 [-], 1452597513613- 
23BN49_0944965716..968271 [-], 2556597513614-  TssI
24BN49_0945968487..970190 [-], 1704597513615-  TagL
25BN49_0946970193..970858 [-], 666597513616-  TssL
26BN49_0947970855..972195 [-], 1341597513617-  TssK
27BN49_0948974088..975185 [+], 1098597513618- 
28BN49_0949 (ygdL)975273..976094 [+], 822597513619- 
29BN49_0950976137..976568 [-], 432597513620- 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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