SecReT6
I. Summary
SecReT6 ID908 insolico
StrainBacteroides fragilis YCH46
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_006347
Location2277219..2299620
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number111111111
ComponentTssOTssPHcp
Number215
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BF19332274436..2274804 [-], 36953713223hypothetical protein 
2BF19342274845..2277217 [-], 237353713224hypothetical protein 
3BF19352277219..2278112 [-], 89453713225hypothetical protein  TssP
4BF19362278109..2278636 [-], 52853713226hypothetical protein  TssO
5BF19372278649..2279152 [-], 50453713227hypothetical protein  TssO
6BF19382279158..2280114 [-], 95753713228hypothetical protein  TssG
7BF19392280116..2281258 [-], 114353713229hypothetical protein  TssK
8BF19402281286..2282134 [-], 84953713230hypothetical protein  TssN
9BF19412282194..2283222 [-], 102953713231hypothetical protein 
10BF19422283210..2286179 [-], 297053713232hypothetical protein 
11BF19432286190..2286876 [-], 68753713233hypothetical protein  PAAR
12BF19442286895..2288745 [-], 185153713234hypothetical protein  VgrG
13BF19452288771..2290588 [-], 181853713235hypothetical protein  TssF
14BF19462290619..2291059 [-], 44153713236hypothetical protein  TssE
15BF19472291056..2291514 [-], 45953713237hypothetical protein 
16BF19482291519..2291938 [-], 42053713238hypothetical protein  Hcp
17BF19492291941..2292348 [-], 40853713239hypothetical protein  Hcp
18BF19502292541..2292969 [-], 42953713240hypothetical protein 
19BF19512292939..2293934 [-], 99653713241hypothetical protein 
20BF19522293947..2294351 [-], 40553713242hypothetical protein  Hcp
21BF19532294357..2294785 [-], 42953713243hypothetical protein  Hcp
22BF19542294801..2297284 [-], 248453713244endopeptidase Clp ATP-binding subunit B  ClpV
23BF19552297297..2298676 [-], 138053713245hypothetical protein  TssC
24BF19562298692..2299141 [-], 45053713246hypothetical protein  TssB
25BF19572299231..2299620 [-], 39053713247hypothetical protein  Hcp
26BF19582300061..2300804 [-], 74453713248transcriptional regulator 
27BF19592300964..2301140 [+], 17753713249hypothetical protein 
28BF19602301149..2302420 [+], 1272537132508-amino-7-oxononanoate synthase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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