SecReT6
I. Summary
SecReT6 ID909 insolico
StrainBacteroides fragilis YCH46
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_006347
Location3238391..3255873
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number111111111
ComponentTssOTssPHcp
Number211
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BF28263233545..3234300 [-], 75653714118chromosome-partitioning ATPase 
2BF28273234541..3234954 [-], 41453714119ssDNA-binding protein 
3BF28283235737..3236513 [-], 77753714120transcriptional regulator 
4BF28293237083..3237658 [-], 57653714121hypothetical protein 
5BF28303237664..3238278 [-], 61553714122hypothetical protein 
6BF28313238391..3239770 [-], 138053714123hypothetical protein  TssC
7BF28323239783..3240250 [-], 46853714124hypothetical protein  TssB
8BF28333240418..3240840 [+], 42353714125hypothetical protein  TssE
9BF28343240848..3242623 [+], 177653714126hypothetical protein  TssF
10BF28353242620..3245058 [+], 243953714127ATP-dependent Clp protease ATP-binding subunit  ClpV
11BF28363245043..3245978 [+], 93653714128hypothetical protein  TssG
12BF28373245992..3246870 [+], 87953714129hypothetical protein  TssN
13BF28383246874..3248022 [+], 114953714130hypothetical protein  TssK
14BF28393248043..3248540 [+], 49853714131hypothetical protein  TssO
15BF28403248537..3248983 [+], 44753714132hypothetical protein  TssO
16BF28413248994..3249935 [+], 94253714133hypothetical protein  TssP
17BF28423249932..3252280 [+], 234953714134hypothetical protein 
18BF28433252286..3253089 [+], 80453714135hypothetical protein 
19BF28443253604..3253999 [+], 39653714136hypothetical protein  Hcp
20BF28453254110..3255873 [+], 176453714137hypothetical protein  VgrG
21BF28463255913..3257256 [+], 134453714138hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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