SecReT6
I. Summary
SecReT6 ID916 insolico
StrainBacteroides salanitronis DSM 1817
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015164
Location1220080..1242528
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number111111111
ComponentTssOTssPHcp
Number216
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bacsa_10651215319..1215672 [-], 354325298209hypothetical protein 
2Bacsa_10661215679..1219998 [-], 4320325298210RHS repeat-associated core domain 
3Bacsa_10671220080..1221447 [-], 1368325298211hypothetical protein  TssC
4Bacsa_10681221453..1221926 [-], 474325298212hypothetical protein  TssB
5Bacsa_10691221972..1223330 [-], 1359325298213hypothetical protein 
6Bacsa_10701223342..1225153 [-], 1812325298214Rhs element Vgr protein  VgrG
7Bacsa_10711225273..1225671 [-], 399325298215hypothetical protein  Hcp
8Bacsa_10721225935..1228415 [+], 2481325298216ATPase AAA-2 domain-containing protein  ClpV
9Bacsa_10731228430..1228852 [+], 423325298217hypothetical protein  Hcp
10Bacsa_10741228866..1229282 [+], 417325298218hypothetical protein  Hcp
11Bacsa_10751229285..1230145 [+], 861325298219hypothetical protein 
12Bacsa_10761230142..1230504 [+], 363325298220hypothetical protein 
13Bacsa_10771230512..1230805 [+], 294325298221hypothetical protein 
14Bacsa_10781230820..1231224 [+], 405325298222hypothetical protein  Hcp
15Bacsa_10791231221..1231661 [+], 441325298223hypothetical protein  Hcp
16Bacsa_10801231652..1232116 [+], 465325298224GPW/gp25 family protein  TssE
17Bacsa_10811232125..1233969 [+], 1845325298225hypothetical protein  TssF
18Bacsa_10821233984..1234862 [+], 879325298226hypothetical protein  TssN
19Bacsa_10831234874..1236034 [+], 1161325298227hypothetical protein  TssK
20Bacsa_10841236054..1237016 [+], 963325298228hypothetical protein  TssG
21Bacsa_10851237038..1237535 [+], 498325298229hypothetical protein  TssO
22Bacsa_10861237547..1238056 [+], 510325298230hypothetical protein  TssO
23Bacsa_10871238062..1238967 [+], 906325298231PKD domain-containing protein  TssP
24Bacsa_10881238974..1241463 [+], 2490325298232hypothetical protein 
25Bacsa_10891241488..1242528 [+], 1041325298233hypothetical protein  Hcp
26Bacsa_10901242540..1243613 [+], 1074325298234hypothetical protein 
27Bacsa_10911243618..1244502 [+], 885325298235hypothetical protein 
28Bacsa_10921244515..1244895 [+], 381325298236hypothetical protein 
29Bacsa_10931244943..1245818 [+], 876325298237hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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