SecReT6
I. Summary
SecReT6 ID919 insolico
StrainRunella slithyformis DSM 1959
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015703
Location6055401..6072027
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number111111111
ComponentTssOTssPHcp
Number011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Runsl_52066050919..6052508 [-], 1590338214575Ser/Thr phosphatase 
2Runsl_52076052517..6053215 [-], 699338214576forkhead-associated protein  Fha
3Runsl_52086053230..6054618 [-], 1389338214577hypothetical protein 
4Runsl_52096054638..6055372 [-], 735338214578forkhead-associated protein 
5Runsl_52106055401..6056975 [-], 1575338214579PKD domain-containing protein  TssP
6Runsl_52116057176..6059680 [+], 2505338214580ATPase AAA  ClpV
7Runsl_52126059685..6060629 [+], 945338214581hypothetical protein 
8Runsl_52136060683..6061138 [+], 456338214582hypothetical protein  TssB
9Runsl_52146061192..6062565 [+], 1374338214583hypothetical protein  TssC
10Runsl_52156062606..6062998 [+], 393338214584hypothetical protein  Hcp
11Runsl_52166063102..6064139 [+], 1038338214585hypothetical protein 
12Runsl_52176064212..6066005 [+], 1794338214586Rhs element Vgr protein  VgrG
13Runsl_52186066018..6066536 [+], 519338214587hypothetical protein 
14Runsl_52196066551..6067174 [+], 624338214588GPW/gp25 family protein  TssE
15Runsl_52206067201..6069024 [+], 1824338214589hypothetical protein  TssF
16Runsl_52216069037..6070038 [+], 1002338214590hypothetical protein  TssG
17Runsl_52226070061..6070909 [+], 849338214591hypothetical protein  TssN
18Runsl_52236070915..6072027 [+], 1113338214592hypothetical protein  TssK
19Runsl_52246072044..6072343 [+], 300338214593PAAR repeat-containing protein  PAAR
20Runsl_52256072383..6072862 [+], 480338214594hypothetical protein 
21Runsl_52266072879..6073358 [+], 480338214595hypothetical protein 
22Runsl_52276073390..6073692 [-], 303338214596rhodanese-like protein 
23Runsl_52296075169..6075573 [-], 405338214597hypothetical protein 
24Runsl_52306075603..6076604 [-], 1002338214598peptidase M28 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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